Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54627g00001 TCAGAAGTTGAAAAACTTTCTTTGGAAGAGCAGAGACTAGATGATAAAATAAGGGAAATGCAAGAAAAGCTGAGAAGTTTAAGTGAAGATGAAAATAACCAGAAGTTCCTTTTTGTGACCGAGGAAGATATTAAAGGCCTACCTTGCTTCCAGAATGAAACTTTGATAGCAATCAAAGCTCCGCATGGAACCACCTTGGAAGTCCCCGATCCTGAGGAA 219 0.3973 SEVEKLSLEEQRLDDKIREMQEKLRSLSEDENNQKFLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPEE 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54627g00001 73 Coils Coil 3 33 - -
Trme54627g00001 73 CDD E2F_DD 1 73 IPR032198 GO:0046983
Trme54627g00001 73 PANTHER TRANSCRIPTION FACTOR E2F 2 72 IPR015633 GO:0000978|GO:0006357
Trme54627g00001 73 SUPERFAMILY E2F-DP heterodimerization region 2 73 IPR037241 -
Trme54627g00001 73 Pfam E2F transcription factor CC-MB domain 2 72 IPR032198 GO:0046983
Trme54627g00001 73 Gene3D - 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54627g00001 Trme-Chr54627 13 566 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54627g00001 2 73 E2F-DP Transcription Factor Family AT5G22220 76.389 3.87e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54627g00001 K06620 - csin:114277282 137.117