Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54589g00001 ATGAACGAACGTAGCAGTCGTTCTCACAGTTGCTTGACAGTTCATGTTCATGGAAAGAACTTGATATCAGGAGGCATTATTCGAGGTAGTATGCATCTTGTTGACCTTGCAGGAAGTGAGAGGGCCGATAAAACCGAGGCCACAGGAGATAGACTTAAAGAGGCTCAACATATCAACAAGTCACTTTCTGCCTTAGGAGATGTAATCGCTTCCCTTGCGCAGAAGAATGCACATGTTCCATACCGGAACAGTAAACTTACTCAGCTACTTCAGGATGCACTTGGAGGGCAGGCCAAGACTCTCATGTTTGTTCATATTAGTCCGGAACCTGATGCTCTTGGAGAAACACTAAGTACACTCAAGTTCGCAGAACGCGTATCCACCGTTGAACTAGGAGCTGCAAAAGTAAATAAAGATAACACAGAAGTGAAAGACCTTAAAGAACAGGTTCTTACATTGTCTTTTGTTCTCTAG 474 0.4367 MNERSSRSHSCLTVHVHGKNLISGGIIRGSMHLVDLAGSERADKTEATGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYRNSKLTQLLQDALGGQAKTLMFVHISPEPDALGETLSTLKFAERVSTVELGAAKVNKDNTEVKDLKEQVLTLSFVL 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54589g00001 157 ProSitePatterns Kinesin motor domain signature. 29 40 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trme54589g00001 157 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 65 148 - -
Trme54589g00001 157 PANTHER KINESIN-LIKE PROTEIN KLP-3 1 153 IPR027640 GO:0003777|GO:0007018
Trme54589g00001 157 SMART kinesin_4 1 137 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme54589g00001 157 Gene3D Kinesin motor domain 1 156 IPR036961 -
Trme54589g00001 157 ProSiteProfiles Kinesin motor domain profile. 1 129 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme54589g00001 157 PRINTS Kinesin heavy chain signature 30 48 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme54589g00001 157 PRINTS Kinesin heavy chain signature 79 100 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trme54589g00001 157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 154 IPR027417 -
Trme54589g00001 157 Pfam Kinesin motor domain 1 128 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54589g00001 Trme-Chr54589 169 829 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54589g00001 1 129 Calmodulin-binding Proteins AT5G65930 55.814 1.46e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54589g00001 K10406 - gmx:100799535 274.248