Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54519g00001 ATGCTGTATTCAGTATGGTTTTGTTACAATGTTTCTGGAACAATGGCTCCTAGACAACCGTGGCATGATTTGCACTGCAGAATAGATGGACCTGCTGCATATGATATTCTTATTAATTTTGAACAGCGATGGAGAAAATCAACCAAGTGGAAAGAGTTTGCAATTCTTTTCAAAAAAGCATCTCAGTGGAATGATGATGCTTTAATAAGAGTAGAACGCATCTCGTGGATATTAAGTCCTTCTAATCCTCCCTCAAAGAATGATTTTACAACTATTCCTGAGGATGATCCTTTGGTATGGGTTTCCAGTGAAGATGATCCTGAAAACTGGCATGTTCAG 339 0.3835 MLYSVWFCYNVSGTMAPRQPWHDLHCRIDGPAAYDILINFEQRWRKSTKWKEFAILFKKASQWNDDALIRVERISWILSPSNPPSKNDFTTIPEDDPLVWVSSEDDPENWHVQ 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54519g00001 113 Gene3D Endonuclease Chain A 9 72 - -
Trme54519g00001 113 PANTHER PHOSPHOLIPASE D 14 113 IPR015679 -
Trme54519g00001 113 SUPERFAMILY Phospholipase D/nuclease 17 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54519g00001 Trme-Chr54519 25 466 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54519g00001 12 113 Phospholipase D Gene Family (Wang group) AT4G35790 72.549 9.17e-50 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54519g00001 K01115 - gmx:100814486 193.741