Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54402g00001 CCTGAGTGGATGGCTCCCGAATTTCTTCGTGGAGAACCTACAAATGAGAAGTCTGATGTTTACAGTTTTGGAGTTATCCTGTGGGAACTCGTGACCTTACAACAACCTTGGAATGGACTCAGCCATGCCCAGGTGGTTGGAGCAGTGGCATTCCAGAGTAGGAGACCTTCTATCCCTCCAAACATCTCCCCAGTATTGGCCTCCCTTATGGAATCTTGTTGGGCTGAGTAA 231 0.4892 PEWMAPEFLRGEPTNEKSDVYSFGVILWELVTLQQPWNGLSHAQVVGAVAFQSRRPSIPPNISPVLASLMESCWAE 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54402g00001 76 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 75 - -
Trme54402g00001 76 Pfam Protein tyrosine and serine/threonine kinase 2 75 IPR001245 GO:0004672|GO:0006468
Trme54402g00001 76 Gene3D Transferase(Phosphotransferase) domain 1 1 76 - -
Trme54402g00001 76 SUPERFAMILY Protein kinase-like (PK-like) 1 75 IPR011009 -
Trme54402g00001 76 ProSiteProfiles Protein kinase domain profile. 1 76 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54402g00001 Trme-Chr54402 231 780 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54402g00001 1 76 MAP Kinase Kinase Kinase AT4G24480 86.842 1.74e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trme54402g00001 PK_Tyr_Ser-Thr 3.2e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54402g00001 - - vvo:131620676 147.517