Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54380g00001 TTCGATGATCAAAGATATCAAGAAACACTTCAAAGGTCATCACTGATAAAGGACCTTGAGTTGCTTCCCTATGGTGACCTCACCGAAATAGGTGAGAGAGGAGTTAATTTAAGTGGAGGTCAAAAGCAACGAATTCAACTTGCTCGAGCTCTTTATGAGAATGCTGATATATATCTATTGGATGATCCATTTAGTGCTGTTGATGCACATACTGCAAAAAGTTTGTTTAATGAATACATCATGGAAGGACTCGAAGGGAAAACTGTCTTACTCGTCACTCATCAAGTTGACTTTCTCCCAGCATTTCATTCTGTTTTGTTAATGTCAGATGGGGTAATCCTACAAGCTGGTCCATATCACCACCTAATGACCGAAAGCGAAGAATTCCAAGACCTTGTCAATGCTCACAAGGTTACTGCCGCCAGTTCAAACCAGCTCGTGAATGTTACTTTTTCTCAAGCTTCTCGAAATATTGCTCAAGCTTTAGTGGAAAAGCAGTGTAAAGAAGCAAATGGAAATCAATTAATTAAGCAAGAAGAAAGAGAGATAGGAGACACAGGATACTGCAAAACTCATGGATGGCTGCAAATGTCGACAATCCCCATGTCACCACGTTGCAATTGGTTTTAG 630 0.4016 FDDQRYQETLQRSSLIKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYENADIYLLDDPFSAVDAHTAKSLFNEYIMEGLEGKTVLLVTHQVDFLPAFHSVLLMSDGVILQAGPYHHLMTESEEFQDLVNAHKVTAASSNQLVNVTFSQASRNIAQALVEKQCKEANGNQLIKQEEREIGDTGYCKTHGWLQMSTIPMSPRCNWF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54380g00001 209 Pfam ABC transporter 28 64 IPR003439 GO:0005524
Trme54380g00001 209 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 187 - -
Trme54380g00001 209 Gene3D - 1 162 IPR027417 -
Trme54380g00001 209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 135 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54380g00001 Trme-Chr54380 1 905 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54380g00001 8 156 Calmodulin-binding Proteins AT2G36910 33.766 3.63e-20 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54380g00001 K05666 - gmx:100786761 280.796