Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54377g00001 ATGTTGAGAAATGTGACAAATGGTTTTATCGATGTTTATGAAGGTGGAAGTTCTGATGGTTTACCTGGTTTACAAATTTATACATTGCTAATGAACACAACCGATATACAGCATGAGATTCTGAAGAAACTTCACAGCGACATGGCTAAGTGCAGTGGTTACCCTCTTGAGTTAGAGCTTTTGATAACTCTCGGATCGATACATCCTTGGTTGGTCAAAACCGCGGTATGTTCTCAGAAGTTTTTAACAAAGGAGCAATTGAGTGATCTAGATAAGTACAAGTTTGATTTGAAAATCGGTTCAAAAGTAAGATTTGTTTTGAGCCTTATCTACCGTGTTGTCAAGAACGAAAAGGTTCTTATCTTTTGCCACAACATTGCTCCTGTGAAATTATTTCAAGAATATTTCGAGAAGTTCTTTGGATGGCAAAAAGGNNGCGAAGTTTTAGTACTAACCGGGGAACTCGAGCTCTTCGAACGTGGGAAAATAATGGATAAATTTGAGGAGCCCGGTAATGTATCTAAGATATTACTTGCTTCAATTACAGCCTGTGCTGAAGGCATTAGTTTGACAGCGGCGTCTCGTGTGATTATGTTGGATTCGGAATGGAACCCTTCGAAAACAAAGCAAGCTATTGCACGTGCATTCCGTCCCGGTCAGCAGAAAATGGTTTATGTTTATCAGCTCCTGGTGACAGGTTCATTGGAGGAAGATAAATACCGAAGAACCACATGGAAAGAGTGGGTGTCGAGCATGATTTTCAGCGAGGC 770 0.4039 MLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNTTDIQHEILKKLHSDMAKCSGYPLELELLITLGSIHPWLVKTAVCSQKFLTKEQLSDLDKYKFDLKIGSKVRFVLSLIYRVVKNEKVLIFCHNIAPVKLFQEYFEKFFGWQKGXEVLVLTGELELFERGKIMDKFEEPGNVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54377g00001 257 SMART helicmild6 130 219 IPR001650 -
Trme54377g00001 257 Gene3D - 22 257 IPR027417 -
Trme54377g00001 257 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 256 IPR044567 GO:0080188
Trme54377g00001 257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 255 IPR027417 -
Trme54377g00001 257 Pfam Helicase conserved C-terminal domain 102 218 IPR001650 -
Trme54377g00001 257 CDD SF2_C_SNF 94 230 - -
Trme54377g00001 257 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 105 257 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54377g00001 Trme-Chr54377 1 770 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54377g00001 98 237 RAD5 or RAD16-like Gene Family AT5G43530 32.867 1.07e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54377g00001 K10875 - gmx:100811703 456.447