Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54226g00001 ATGGACCAAGCTTCTTCACTTCCTAACAATCTTTCACCTCAACTACTTTCACGTCCTTACATTCTCTGTACTGTCTCCGGTGTTCATTTCCTCGCCGATCCGAAAACCGATGAGGTTTTTGCTAAGCTTTTTCTTCAACCTTTGAACGATTTCACCGCTGTTTTTTCTCGTGCTGTTATTCAGGAAGTTGATGATGGAGAGAGGATTTCTTCGTTTGCGAAGATTCTCACTCCTTCTGATGCTAACAACGGCGGTGGATTTTCCGTTCCGAGGTTTTGTGCTGATTCGATTTTCCCTCCGCTTGATTATACTATGGACCCGCCGTTTCAGTCTCTTTCGATCACCGATGTTCATGGCTTGACTTGGGAGTTTCGTCACATTTACCGTGGTACGCCGCGGCGACATCTGTTGACCACCGGTTGGAGTAGGTTCGTCAACGGTAAGAAGCTAGTCGCCGGTGATTCTGTTGTTTTTATGAAGAACACTAGAGGTGCAATGTTCGTCGGGATCCGTCGCGCTGTTCGATTTGTTCCGGCTCGAAGTTGC 546 0.4725 MDQASSLPNNLSPQLLSRPYILCTVSGVHFLADPKTDEVFAKLFLQPLNDFTAVFSRAVIQEVDDGERISSFAKILTPSDANNGGGFSVPRFCADSIFPPLDYTMDPPFQSLSITDVHGLTWEFRHIYRGTPRRHLLTTGWSRFVNGKKLVAGDSVVFMKNTRGAMFVGIRRAVRFVPARSC 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54226g00001 182 CDD B3_DNA 71 172 IPR003340 GO:0003677
Trme54226g00001 182 SUPERFAMILY DNA-binding pseudobarrel domain 68 177 IPR015300 -
Trme54226g00001 182 Gene3D - 69 174 IPR015300 -
Trme54226g00001 182 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 175 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme54226g00001 182 SMART B3_2 72 174 IPR003340 GO:0003677
Trme54226g00001 182 ProSiteProfiles B3 DNA-binding domain profile. 72 174 IPR003340 GO:0003677
Trme54226g00001 182 FunFam Auxin response factor 70 174 - -
Trme54226g00001 182 Pfam B3 DNA binding domain 72 173 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54226g00001 Trme-Chr54226 1 546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54226g00001 5 172 B3 DNA Binding Superfamily AT1G77850 59.538 3.20e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme54226g00001 B3 8.7e-23 CL0405