Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54217g00001 ATGGACATCACATTGCTAGGTACATGGGGAAAATTTGCAGCAGAGATTCCAGATTCTGCTAGGCATGGAGCTCGAGTTTGGCTTGGTATATTTAATACTATTGAGGAAGCTGCAAGAGCTTACGATCGTGCTGCTTTTGATATGAGAGGTTCTTCAACTATTCTTAACTTTCCACATGAACAGTTTCCATGCAATGTGGTTCGTAATCCTTCTAAGCCCTCTTCTTCCTCCAATTCAACCTCATCGTGTTCAAAGGTTAAATCAGAGCTTGATGAACAGGTTATAGAGTTTGAGTATTTTGATGAAAAATTGTTAGAGGAACTCTTGGATTGTGAGAATACAATCAATCACAACTGGTTCAAGTAG 366 0.3934 MDITLLGTWGKFAAEIPDSARHGARVWLGIFNTIEEAARAYDRAAFDMRGSSTILNFPHEQFPCNVVRNPSKPSSSSNSTSSCSKVKSELDEQVIEFEYFDEKLLEELLDCENTINHNWFK 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54217g00001 121 CDD AP2 9 59 IPR001471 GO:0003700|GO:0006355
Trme54217g00001 121 SUPERFAMILY DNA-binding domain 8 60 IPR016177 GO:0003677
Trme54217g00001 121 SMART rav1_2 9 64 IPR001471 GO:0003700|GO:0006355
Trme54217g00001 121 Gene3D AP2/ERF domain 5 59 IPR036955 GO:0003700|GO:0006355
Trme54217g00001 121 ProSiteProfiles AP2/ERF domain profile. 1 58 IPR001471 GO:0003700|GO:0006355
Trme54217g00001 121 Pfam AP2 domain 8 50 IPR001471 GO:0003700|GO:0006355
Trme54217g00001 121 PANTHER DNA-BINDING DOMAIN 9 110 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54217g00001 Trme-Chr54217 387 752 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54217g00001 9 112 AP2-EREBP Transcription Factor Family AT3G23230 57.407 2.16e-31 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme54217g00001 AP2 7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54217g00001 - - cam:101512924 144.05