Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54204g00001 ATGAGGAAGTATAATATTGACATTAGTGAAGACCCAAAAGCCCTTAGGAGGTTGAAGTCTGCTTGCGAGAAAGCAAAGAGGATTCTTTCTTCAAATATTGAGACCAACATTGAGATAGAAAATTTAAATCAAAATATAGATTTCTACTCATCAATTAGTCGCGCAAGATTTGAGGAGCTCAACAAAAACCATTTCAACAAATGCATGGAGATTGTAGAAAAATGTTTAATGGATAGTGGAATGGACAAGAGTAGCATTCAGGATGTTGTTCTTGTCGGGGGCTCTACCAGGATGGTAAAAGTGCAACAATTATTGAGTGATTTCTTTGAAGGGAAGATTTTATGCAAAAGCATCGATGCTGATGAAGCAGTTGCACATGGTGCTGCTGTCCATGCTTCTATATTGAGTGGTGAGTTTAGTGAAAAGGTTCAAGATTTGCTATTGAGGGATGTCATTCCTTTGTCTCTTGGATTGGAGACTCATGGGGGAATCATGAAAATAATAATTCCTAGGAACACCATAATTCCTACTAGCATGGAACACATATTCACCACACATTTGAAAGATCAAAGCAATATTTTAATTCATGTTTATGAGGGTGAGATGCCAACAACTAAGGATAACAACTTACTAGGAAAATTTGTGTTGGAAATTCCTCCGNCTCCAGCAGGTGTTCCTCAAATCAAGATCAACTTCCGAATTGATGATGATGGCGTCTTACACGTCACTAGCTCGGAAAAATCTCTTGGAGTTAACAATAAAGTTAAAATAATAAGTGACAAGGGAAGACTCTCAACGAAGGATATTGAACGGATGATCAAAGAAGCTGAGGAGTACAAAGAGGAAGACAAGAG 854 0.3782 MRKYNIDISEDPKALRRLKSACEKAKRILSSNIETNIEIENLNQNIDFYSSISRARFEELNKNHFNKCMEIVEKCLMDSGMDKSSIQDVVLVGGSTRMVKVQQLLSDFFEGKILCKSIDADEAVAHGAAVHASILSGEFSEKVQDLLLRDVIPLSLGLETHGGIMKIIIPRNTIIPTSMEHIFTTHLKDQSNILIHVYEGEMPTTKDNNLLGKFVLEIPPXPAGVPQIKINFRIDDDGVLHVTSSEKSLGVNNKVKIISDKGRLSTKDIERMIKEAEEYKEEDK 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54204g00001 284 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 141 284 IPR029047 -
Trme54204g00001 284 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 132 284 IPR029047 -
Trme54204g00001 284 Gene3D - 116 131 - -
Trme54204g00001 284 PRINTS 70kDa heat shock protein signature 145 164 - -
Trme54204g00001 284 PRINTS 70kDa heat shock protein signature 86 102 - -
Trme54204g00001 284 PRINTS 70kDa heat shock protein signature 118 138 - -
Trme54204g00001 284 PRINTS 70kDa heat shock protein signature 225 241 - -
Trme54204g00001 284 SUPERFAMILY Actin-like ATPase domain 2 135 IPR043129 -
Trme54204g00001 284 Coils Coil 269 284 - -
Trme54204g00001 284 FunFam Heat shock 70 kDa protein 138 284 - -
Trme54204g00001 284 Gene3D Actin; Chain A, domain 4 2 67 - -
Trme54204g00001 284 FunFam heat shock 70 kDa protein 14 1 67 - -
Trme54204g00001 284 Gene3D - 68 115 - -
Trme54204g00001 284 Pfam Hsp70 protein 2 284 IPR013126 GO:0005524|GO:0140662
Trme54204g00001 284 PANTHER HEAT SHOCK PROTEIN 70KDA 2 282 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54204g00001 Trme-Chr54204 27 880 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54204g00001 2 284 Calmodulin-binding Proteins AT3G12580 64.085 1.54e-127 375