Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54186g00001 GTGCTATCTGAAGTGAAACCAGAGGAGAAGAACAAGTTCATAAAGGAACTTCAGAAAGATAAGAAAATTGTAGCTATGGTTGGTGATGGAATTAACGATGCAGCTGCCCTGGCTTCTTCACATATAGGTATTGCATTGGGTGGAGGTGTTGGAGCTGCCAGTGAGGTGTCTTCCATTGTATTGATGCACAACCATCTCTCACAG 204 0.4363 VLSEVKPEEKNKFIKELQKDKKIVAMVGDGINDAAALASSHIGIALGGGVGAASEVSSIVLMHNHLSQ 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54186g00001 68 Pfam haloacid dehalogenase-like hydrolase 3 39 - -
Trme54186g00001 68 PRINTS P-type cation-transporting ATPase superfamily signature 50 62 - -
Trme54186g00001 68 PRINTS P-type cation-transporting ATPase superfamily signature 27 46 - -
Trme54186g00001 68 Gene3D - 1 68 IPR023214 -
Trme54186g00001 68 PANTHER ATP7, ISOFORM B 1 68 - -
Trme54186g00001 68 NCBIfam HAD-IC family P-type ATPase 3 66 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme54186g00001 68 SUPERFAMILY HAD-like 3 67 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54186g00001 Trme-Chr54186 336 539 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54186g00001 1 66 Primary Pumps ATPases AT5G44790 51.515 1.27e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54186g00001 K17686 - gmx:100796210 99.7525