Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54130g00001 ATGAAATTTAATGAAAGGGTTATTTGGATTGTGCAGAATGATGGTGATGGAAAACGGACTAAAGCATCGGGGAACAGGAATGAAGGTGGTGATGGTAAAGTTGAAGGAGAAGCCAGTTCAGGAAAGCCTGCGGAGCAAAGCAGTAAGCCACCTCCTCCCGACCCTCCTAAGCAAGATTACATCCACGTGCGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAACGC 237 0.481 MKFNERVIWIVQNDGDGKRTKASGNRNEGGDGKVEGEASSGKPAEQSSKPPPPDPPKQDYIHVRARRGQATDSHSLAER 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54130g00001 79 MobiDBLite consensus disorder prediction 12 79 - -
Trme54130g00001 79 MobiDBLite consensus disorder prediction 19 35 - -
Trme54130g00001 79 MobiDBLite consensus disorder prediction 59 79 - -
Trme54130g00001 79 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 79 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54130g00001 Trme-Chr54130 418 654 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54130g00001 11 79 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 56.000 4.81e-13 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54130g00001 - - jcu:119369479 99.3673