Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5409g00001 ATGATACAAATAAAAAAGAAAGTTTCGGCGAAGCATCTTTTGCAAGTCTTTTGTGATTCGCCTTTTCAGGCACGGACAATATTGTTGCCTGAACTTTGGGAGCGTCTATTTTCTCCGCAATTTGCTCATTTGAAGAAATGGTATAACAACAAGGAAGGAACTCAAACTTTTGCTTTATATTACAAAGATTGGCTCAGTGAAGGAGTAGAAACTCCAACTATTCCTTCTATTGGAATTCCATCATTTTCTGTTACAAGTCGACAGGGAAGTTCATTTGGTCATTCTTTTGAGTCTGCTAGCTCAAATGAACCATTCTCACCACAGGCAATGGTCAGCAAGAAGCTATACGATTCTTTCTTTGGTGGATATAGTAAACCTCAAGTCTATGTTGTTGATGAAGATAAGGATGAAGATAGTTATGAAAATTGTGAGAGAGGCTCTTATGGTTCAACTGTCGTTAAAAAAACAGTAATATATGAATCTGAAACTGTTAAATTTATTGATCAAAGTGATGAAGATTTCACTCCAAGTGTTCCAGTTCATGGATTCCATCCTCAGAAAGGAACATCAAGGACAGCTGCAGAAGAATGGAAAGAGAAGAATTCCAGAAATGCTACTAGAAAATATTTCTCCATAGAAACTAATTTAAACAGTCGCATAGTTGATGATCTACCACATGAAAAAGGAAATGAAATTTCTCTCAGAAAGACGCAACCAAATATGATAAGCTCTACTCTTGAAGGATCATATTTTCCAAGCATACCACAGGAATTTATTTGTCCACTGACGAGAAAGATCTTTGAGGAACCAGTTACCTTAGAATCTGGTCAAACCTTTGAAAGAAAAGCCATCAAGGCATGGTTTCAAAAAGGAAACAGAACATGTCCAGTAACAGGAAATAGTTTAGAGTGTGTTTTCATGCCATTTACCAACCTTATTTTGAAGCGTTTGATCGATAACTGGAAGTCAGAAGATTTTGACCGCCTTCTTGATTTCGCCTCTCAAACGGTGGAAAATTCAGAGGAACTTAAGTTGAAAAAGCACGATGAGGCTATCGTTTTCAAGAGATTTGAACTAGGAAATATGGAAGAAAAATCACTTGTTTTGGAGATCTTGTTAAATTGTATTCAAGCAGACTCAAGTTGCATATACAAGATAGCTAGAAGTGTCAACAGAAAATTTCTTCTTGAGCTTCTTCACAGCAAGGAGATTACACCAACAACAAACGCATTTCGCTTCCTTACTGAACTTTTGTCAATGAAGAGGAAAAAGGATGTTACTTCTTTCATAAGTGGTTTGGTGAGTGAAGATGTATTTA 1318 0.3642 MIQIKKKVSAKHLLQVFCDSPFQARTILLPELWERLFSPQFAHLKKWYNNKEGTQTFALYYKDWLSEGVETPTIPSIGIPSFSVTSRQGSSFGHSFESASSNEPFSPQAMVSKKLYDSFFGGYSKPQVYVVDEDKDEDSYENCERGSYGSTVVKKTVIYESETVKFIDQSDEDFTPSVPVHGFHPQKGTSRTAAEEWKEKNSRNATRKYFSIETNLNSRIVDDLPHEKGNEISLRKTQPNMISSTLEGSYFPSIPQEFICPLTRKIFEEPVTLESGQTFERKAIKAWFQKGNRTCPVTGNSLECVFMPFTNLILKRLIDNWKSEDFDRLLDFASQTVENSEELKLKKHDEAIVFKRFELGNMEEKSLVLEILLNCIQADSSCIYKIARSVNRKFLLELLHSKEITPTTNAFRFLTELLSMKRKKDVTSFISGLVSEDVF 439
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trme5409g00001 439 Pfam U-box domain 254 324 IPR003613 GO:0004842|GO:0016567
Trme5409g00001 439 SMART Ubox_2 257 321 IPR003613 GO:0004842|GO:0016567
Trme5409g00001 439 SUPERFAMILY RING/U-box 248 324 - -
Trme5409g00001 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 327 IPR013083 -
Trme5409g00001 439 PANTHER OS04G0584500 PROTEIN 239 438 - -
Trme5409g00001 439 ProSiteProfiles U-box domain profile. 253 328 IPR003613 GO:0004842|GO:0016567
Trme5409g00001 439 CDD RING-Ubox_PUB 255 303 IPR045210 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trme5409g00001 Trme-Chr5409 8 2057 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5409g00001 221 322 U-box Gene Family AT1G68940 38.938 5.99e-13 69.3
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5409g00001 - - gmx:100803199 582.793