Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54093g00001 ATGGTTTCTGCAATTGGAAATGATGGACCACTATATGGAACTTTGAATAATCCAGCAGATCAAAGTGATGTGATTGGTGTTGGCGGTATTGACTATAGTGACCATATAGCTTCCTTTTCCTCACGTGGCATGAGTACCTGGGAACTTCCTCATGGTTATGGCCGTGTGAAGCCAGACGTAGTTGCATATGGACGAGACATAATGGGATCAAAGATTAGTTCGGGTTGTAAAAGTTTATCAGGGACCAGTGTTGCAAGTCCTGTAGTTGCTGGTGTTGTATGTTTGCTTGTCAGTGTCATTCCTGAACCTGATCGCAAAAATCTCTTAAATCCAGCAAGCATGAAACAAGCATTGGTCGAGGGTGCTGCAAAACTCGCTGGGCCTAACATGTACGAGCAGGGTGCTGGCAGAGTTGATCT 419 0.4487 MVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYSDHIASFSSRGMSTWELPHGYGRVKPDVVAYGRDIMGSKISSGCKSLSGTSVASPVVAGVVCLLVSVIPEPDRKNLLNPASMKQALVEGAAKLAGPNMYEQGAGRVDL 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54093g00001 140 SUPERFAMILY Subtilisin-like 1 140 IPR036852 GO:0004252|GO:0006508
Trme54093g00001 140 Pfam Subtilase family 1 128 IPR000209 GO:0006508|GO:0008236
Trme54093g00001 140 ProSitePatterns Serine proteases, subtilase family, serine active site. 81 91 IPR023828 -
Trme54093g00001 140 ProSiteProfiles Serine proteases, subtilase domain profile. 1 140 - -
Trme54093g00001 140 Gene3D Peptidase S8/S53 domain 1 140 IPR036852 GO:0004252|GO:0006508
Trme54093g00001 140 PANTHER PEPTIDASE S8 1 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54093g00001 Trme-Chr54093 20 539 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54093g00001 1 140 Subtilisin-like Serine Gene Family AT5G19660 94.286 3.64e-87 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54093g00001 K08653 - gmx:100797547 275.018