Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme54048g00001 ATGGCTGCATTATCGGGTTCTGCATCGTACTTTATGCAGAGAGGATTACCTGGTTCTGGAAACCAACATGAATTGCATAGTCCGCCTGGTATTCGTCAACTACCGAATACCAATTCACCATTTCAACCAAGTATTGGTGGTACTATTGGATCCACATTGCCGATGGATTCTTCCGGAATTTCATCCCAATGTATCAATGTAGGTGCTCCTTCTGCGGCTGCTTCAACTGGTGAACCTGTCAAAAGGAAGCGAGGAAGGCCTAGAAAGTACGGGGCTGACGGAAATGTGTCGTTGGCGTTGACTCCAACAACACCAGCAAGTCAACCTGGATCTGTACCGCAAGGCCAGAAACGCGGTCGCGGACGCCCTCCTGGGTCAGGGAAGAAACAACAATTGGCTTCTGTTGTCGGTAATCCCTGCATTCAAGCAGTCGGCACATTGGTGATCGGTAGATCGAGATCCGATGGTCTTCATTTCGAGCATG 484 0.4938 MAALSGSASYFMQRGLPGSGNQHELHSPPGIRQLPNTNSPFQPSIGGTIGSTLPMDSSGISSQCINVGAPSAAASTGEPVKRKRGRPRKYGADGNVSLALTPTTPASQPGSVPQGQKRGRGRPPGSGKKQQLASVVGNPCIQAVGTLVIGRSRSDGLHFEH 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme54048g00001 161 MobiDBLite consensus disorder prediction 31 70 - -
Trme54048g00001 161 MobiDBLite consensus disorder prediction 1 134 - -
Trme54048g00001 161 MobiDBLite consensus disorder prediction 97 114 - -
Trme54048g00001 161 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 46 138 IPR039605 GO:0003680
Trme54048g00001 161 SMART AT_hook_2 81 93 IPR017956 GO:0003677
Trme54048g00001 161 SMART AT_hook_2 117 129 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme54048g00001 Trme-Chr54048 133 847 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme54048g00001 3 135 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 46.309 1.49e-18 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme54048g00001 - - gmx:100799791 177.948