Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5402g00001 ATGTCGGATATGCACTTGGAAATGAAGGATAGGCAACGGTGGAGAGCGGAAGAGGATGCATTATTACGCGCTTATGTCAAACAGTACGGTCCTAGGGAATGGAACCTTGTGTCTCAGCGCATGAACACACCTCTTAATAGGGACGCAAAATCGTGCTTAGAAAGGTGGAAGAATTATCTCAAGCCTGGTATTAAGAAAGGATCTCTCACTGAGGAAGAACAGCGCCTTGTTATTAGCCTTCAAGCGACACACGGAAATAAATGGAAGAAAATCGCCGCCCAAGTCCCTGGTCGCACTGCTAAGAGGTTAGGGAAGTGGTGGGAAGTATTCAAAGAGAAGCAACAGAGAGAAACAAAAGGTAGTATTAACAGAACCGTCGACCCGATTAACGATAGCAAGTACGAACATATACTCGAAAGTTTTGCCGAGAAACTAGTAAAAGAGAGACCTTCACCTTCGTTTGTCATGGCTGCATCCAACAGTTCATATCTGCATACCGATGCACCACCAACACCAGGATTACTTCCTTCATGGCTTTCAAATTCCAACAATGCCGCACCTGTTAGGCCAAATTCGCCATCAGTGACATTAAGCCTCTCTCCGTCGACAGTTGCAGCGCCTCCTCCGTGGATGCAGCAGCCCGTTCGAGGACCAGACAACACGCCTCTTGTCCTTGGGAACGTAGCTCCTCATGGAGCTGTTCTATCTTACGGTGAAAACATGGTAATGTCTGAGTTGGTGGATTGCTGTAAGGAATTGGAAGAAGTGCATCATGCATTGGCAGCACATAAGAAAGAGGCGGCGTGGAGGTTAAGCCGAGTGGAGCTGCAGTTGGAATCAGAGAAAGCTAGTCGAAGAAGGGAAAAGATGGAGGAAATTGAAGCGAAGATAAAAGCTTTAAGGGAGGAACAAGCGGTTGCGTTGGATAGAATTGAAGGAGAATATAAGGAACAGTTAGCAGGATTGARAAGAGACGCAGAAACCAAAGAGCAGAAACTGACCGAACAATGGGCTGCGAAGCATTTGCGCCTTACGAAGTTTCTAGAACAAGTAGGGTGTAGATCAAGGCTTGCTGAACAAAATGGAAGATAA 1092 0.4634 MSDMHLEMKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVISLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKGSINRTVDPINDSKYEHILESFAEKLVKERPSPSFVMAASNSSYLHTDAPPTPGLLPSWLSNSNNAAPVRPNSPSVTLSLSPSTVAAPPPWMQQPVRGPDNTPLVLGNVAPHGAVLSYGENMVMSELVDCCKELEEVHHALAAHKKEAAWRLSRVELQLESEKASRRREKMEEIEAKIKALREEQAVALDRIEGEYKEQLAGLXRDAETKEQKLTEQWAAKHLRLTKFLEQVGCRSRLAEQNGR 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5402g00001 363 CDD SANT 70 111 IPR001005 -
Trme5402g00001 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Trme5402g00001 363 Gene3D - 11 65 - -
Trme5402g00001 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 60 IPR017930 -
Trme5402g00001 363 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Trme5402g00001 363 Coils Coil 312 322 - -
Trme5402g00001 363 SMART sant 10 62 IPR001005 -
Trme5402g00001 363 SMART sant 65 113 IPR001005 -
Trme5402g00001 363 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 8 360 - -
Trme5402g00001 363 CDD SANT 13 60 IPR001005 -
Trme5402g00001 363 SUPERFAMILY Homeodomain-like 11 105 IPR009057 -
Trme5402g00001 363 Gene3D - 69 128 - -
Trme5402g00001 363 Coils Coil 273 310 - -
Trme5402g00001 363 FunFam MYB-related transcription factor 11 65 - -
Trme5402g00001 363 Coils Coil 324 336 - -
Trme5402g00001 363 ProSiteProfiles Myb-like domain profile. 6 60 IPR001005 -
Trme5402g00001 363 Pfam Myb-like DNA-binding domain 14 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5402g00001 Trme-Chr5402 575 1666 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5402g00001 8 354 MYB Transcription Factor Family AT2G37630 66.304 4.50e-158 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trme5402g00001 Myb_DNA-bind_6 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5402g00001 K09422 - gmx:100819082 612.838