Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme53968g00001 ATGAGCAACGAGAGCAACCTGCAGGTGACTTTCTCAAAGCGTCGCAGCGGGCTCTTCAAGAAAGCTAGTGAGCTTTGTACCCTTTGTGGTGTAGATGTTGCACTTGTTGTATTCTCACCTAGTGAGAAGGTATTTTCCTTTGGTCACCCTAATATTGATACGGTCATAGATCGCTATCTCTCTCGGGTCCCACTCCAAACCACCACCACCATACAATTCATTGAGGCTCACCGCAACGCCAACTTGTGTGAGCTCAATGCTCAATTAACTGAAATCAACAACAAGTTGGACGATGAGAAGAAACGCAGTGATGAGCTGAGCCTTTTGCGCAAGGCGACTGAGGCTCAATTTTGGTGGACTTGTCCAATTGATGGGATGAATAGGGCTGAACTTGAATTCCTCAAGAAGGCTTTGGAGGAGCTTAAGAAACTTGTTGCACAACATGTTAATGAGCTTGCAATTCAGGATGCTCATACTCAAACGCTTCCATTTTTTGTTGGAAATGCTTCATCCTCTAGCACCCCTCTCTATCACCAGCCAAATCCTCAACATGCTCAAGTGTTTTCACCACAAATTTTTCAGAACCCTATGTTGGAGCCTCATTTATTTGGCTTCAACAATATGGGAGGAGGAGGCTATGGACCACCTAATTTCTTTTGA 660 0.447 MSNESNLQVTFSKRRSGLFKKASELCTLCGVDVALVVFSPSEKVFSFGHPNIDTVIDRYLSRVPLQTTTTIQFIEAHRNANLCELNAQLTEINNKLDDEKKRSDELSLLRKATEAQFWWTCPIDGMNRAELEFLKKALEELKKLVAQHVNELAIQDAHTQTLPFFVGNASSSSTPLYHQPNPQHAQVFSPQIFQNPMLEPHLFGFNNMGGGGYGPPNFF 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme53968g00001 219 Coils Coil 89 109 - -
Trme53968g00001 219 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Trme53968g00001 219 Coils Coil 131 151 - -
Trme53968g00001 219 SMART madsneu2 1 50 IPR002100 GO:0003677|GO:0046983
Trme53968g00001 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 2 47 IPR002100 GO:0003677|GO:0046983
Trme53968g00001 219 FunFam Agamous-like MADS-box protein AGL62 3 69 - -
Trme53968g00001 219 Gene3D - 71 163 - -
Trme53968g00001 219 Gene3D - 3 70 IPR036879 GO:0003677|GO:0046983
Trme53968g00001 219 PRINTS MADS domain signature 28 49 IPR002100 GO:0003677|GO:0046983
Trme53968g00001 219 PRINTS MADS domain signature 13 28 IPR002100 GO:0003677|GO:0046983
Trme53968g00001 219 PANTHER MADS BOX PROTEIN 2 148 - -
Trme53968g00001 219 SUPERFAMILY SRF-like 2 69 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme53968g00001 Trme-Chr53968 23 682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme53968g00001 1 174 Type I MADS-box Gene Family AT5G60440 48.588 2.08e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme53968g00001 SRF-TF 8.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme53968g00001 - - mtr:25498511 264.233