Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme539684g00001 ATGGAAACTGCTCCGCTCTCATCGGCCACCGCTGCCGGAAACGGAGGAGGTCCGGCACCGTTTCTTCAGAAAACGTATGACATGGTGAACGATCCCAGCACAGATGAGATCGTTTCATGGAGCTCTACCAACAACAGCTTCGTCGTTTGGAATCCTCCTGAATTCGCTTGCGTTCTTCTTCCAACCTATTTCAAGCACAACAATTTCTCCAGCTTCATTCGTCAGCTCAATACCTAT 237 0.4937 METAPLSSATAAGNGGGPAPFLQKTYDMVNDPSTDEIVSWSSTNNSFVVWNPPEFACVLLPTYFKHNNFSSFIRQLNTY 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme539684g00001 79 FunFam Heat stress transcription factor B-4 13 79 - -
Trme539684g00001 79 Gene3D - 16 79 IPR036388 -
Trme539684g00001 79 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 79 IPR027725 -
Trme539684g00001 79 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme539684g00001 79 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme539684g00001 79 PRINTS Heat shock factor (HSF) domain signature 72 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme539684g00001 79 SMART hsfneu3 17 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme539684g00001 79 Pfam HSF-type DNA-binding 21 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme539684g00001 79 SUPERFAMILY "Winged helix" DNA-binding domain 17 79 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme539684g00001 Trme-Chr539684 13 249 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme539684g00001 18 79 HSF AT4G17750 79.032 4.02e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trme539684g00001 HSF_DNA-bind 2.8e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme539684g00001 K09419 - rcu:8286888 128.642