Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5394g00001 ATGAATCGTGTTCGGGGTTTGAATGCTGCTGCTGGTTTCATCCTACCTGGCTCCATGCTAGACGGTGTTTTTGTCGTTGATTCCTTTGTCGATGCCGCCAATAATATGGGTAGTCGTCGTGGTCGTCGCCAGAACAACAACAACAACCACAACACCAACAGGTGGCTCTCTTCACCACCAACAGCAACAACGCACGTAGGAGTCAATCATCGTCCACATGTTCCTCCTTCCTTCAACGTTCTTAATGGAAGAAGAGGAGGCAGAATAAGCATGACGACAATGGCAGATGATTCTGTTATTCTCTTTGATACTTCTGTTGCCAACAACAACATGGGTCGCAACAATGCGCTGCATACACCTTTTCCTCATCCCATCAATGTTACAACAAAATTAGATAACGATTCAGAAGCGACATGTTCTATATGTCTTTGTGAGCTCTCTAACGATTCATCGGTAGTTCAGATTCGTTGTTCTCATGTATTTCACAGAGATTGCATTCAAAAGTGGATCACCGTGAAAAGGACATGTCCTCTTTGTAGAATAAATGTTTAG 552 0.4366 MNRVRGLNAAAGFILPGSMLDGVFVVDSFVDAANNMGSRRGRRQNNNNNHNTNRWLSSPPTATTHVGVNHRPHVPPSFNVLNGRRGGRISMTTMADDSVILFDTSVANNNMGRNNALHTPFPHPINVTTKLDNDSEATCSICLCELSNDSSVVQIRCSHVFHRDCIQKWITVKRTCPLCRINV 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5394g00001 183 PANTHER RING ZINC FINGER PROTEIN-RELATED 128 181 - -
Trme5394g00001 183 MobiDBLite consensus disorder prediction 38 65 - -
Trme5394g00001 183 CDD RING-H2_PA-TM-RING 138 180 - -
Trme5394g00001 183 SMART ringv_2 138 180 IPR011016 GO:0008270
Trme5394g00001 183 SUPERFAMILY RING/U-box 125 183 - -
Trme5394g00001 183 MobiDBLite consensus disorder prediction 36 73 - -
Trme5394g00001 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 183 IPR013083 -
Trme5394g00001 183 SMART ring_2 139 179 IPR001841 -
Trme5394g00001 183 Pfam Ring finger domain 138 180 IPR001841 -
Trme5394g00001 183 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5394g00001 Trme-Chr5394 1111 1662 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5394g00001 130 183 C3H Transcription Factor Family AT1G80400 44.444 4.42e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5394g00001 - K10635 tpra:123898208 138.272