Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme53914g00001 TCAAGTGTACCTGGAGCAGAGAAAGAAGCATACTTTTTTTGCAAAAGAGGGAGAAAATATAAGAACAGCATAAGGCCAAATAGAGTAACTGGCTCTGGATTTTGGAAAGCAACAGGAATAGACAAACCAATATACTCAAATGGAGGAGAAGGAAAAGATTGTGTTGGACTCAAAAAAACACTTGTTTACTATCGTGGTAGTGCTGGCAAAGGCACTAAAACTGATTGGATGATGCATGAATTTCGTCTACCATCTAAAATTATTGATGCCAACACAAATCTTCCATATGCTAAGAATTTTGATGTTGATAATGCTCATGAAGCTAAAGTAGAGAGAGAAGCTCTCTATAGGGCATCAGGTGCAGTACGCTTGACGGAATTCGATCCAGTTAGGAAGGACGGTTTTGTCAATCGTTTGAACAAGGAGACTACCTCCTTCTTCTTCACTAATTTTCCGGAAGAAACCCAAGTGGTGGAGCTTTGGACTCTGTTTGCTAAACATGGCAGAATAGGAGAAGTTTACATTCCGCAGAAACGGGATAAGCGTGGGAATCGATTCGGATTCGTGAAGTTCAAGGATGTTAAGAATCTTGAAGCTCTAAGTGAAAGATTGGAAGATGTTTGGTTGGGTTCGTTTAAGTTGCGAGTGAATCTGTCTCGCTTTGGCCGGAATAGCTCGAGAG 682 0.4091 SSVPGAEKEAYFFCKRGRKYKNSIRPNRVTGSGFWKATGIDKPIYSNGGEGKDCVGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSKIIDANTNLPYAKNFDVDNAHEAKVEREALYRASGAVRLTEFDPVRKDGFVNRLNKETTSFFFTNFPEETQVVELWTLFAKHGRIGEVYIPQKRDKRGNRFGFVKFKDVKNLEALSERLEDVWLGSFKLRVNLSRFGRNSSR 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme53914g00001 227 SUPERFAMILY RNA-binding domain, RBD 140 224 IPR035979 GO:0003676
Trme53914g00001 227 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 221 IPR000504 GO:0003723
Trme53914g00001 227 Pfam No apical meristem (NAM) protein 6 83 IPR003441 GO:0003677|GO:0006355
Trme53914g00001 227 Gene3D NAC domain 2 117 IPR036093 GO:0003677|GO:0006355
Trme53914g00001 227 CDD RRM_SF 147 217 - -
Trme53914g00001 227 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 149 211 IPR000504 GO:0003723
Trme53914g00001 227 SMART rrm1_1 145 217 IPR000504 GO:0003723
Trme53914g00001 227 Gene3D - 142 223 IPR012677 -
Trme53914g00001 227 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 85 - -
Trme53914g00001 227 ProSiteProfiles NAC domain profile. 1 113 IPR003441 GO:0003677|GO:0006355
Trme53914g00001 227 SUPERFAMILY NAC domain 6 88 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme53914g00001 Trme-Chr53914 86 926 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme53914g00001 16 85 NAC Transcription Factor Family AT2G43000 85.714 1.09e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme53914g00001 NAM 2.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme53914g00001 - - gmx:100790471 180.644