Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme53901g00001 CGGTTTGAATCGGGAACAATGGCTGGGAAAGTGGCGAAGGCAGCTTACGATGCGAAGATGGGGAAGCTTCTTCGAGAGTACACACAAGTTTTGGTTGTTTCGGCAGACAATGTTGGGTCGAACCAGCTTCAGGGTATAAGGAGGGCACTGCATGAAGATTCAGTGGTAGTGATGGGGAAGAACTCCTTGATGAAACGCTCTATTATCCAGGAAGCGGAGAAAACTGGAAACAACAACGCTTTCCTTAATCTTGTTCCTCTCCTTGTGGGGAATGTTGCGTTGATTTTTACAAAAGGTGACTTGAGGGATGTTAGCGAAAAGATTGCCAAGCTCAAAGTTGTTAATCCTATTCTCATGTGCCCTAAGTACAGGTCATATGACTCATACAAAACTTGTTCCTATATGCAATCCGGACAGTTGCCACTGGGCCTCACATGTTGTAACCAACAATCTTCAGAAGCTTCTGAGCCTTTTCTTGTAAGCTCAAAATTCTCGCCACCCCAGCACTGTTACTTGATGAGATCGAGACAGTTCTTGTTGACAAGTATATGGTCTCCTTTTCTCCTTTTGGCTGGTAATTTGTGA 585 0.4462 RFESGTMAGKVAKAAYDAKMGKLLREYTQVLVVSADNVGSNQLQGIRRALHEDSVVVMGKNSLMKRSIIQEAEKTGNNNAFLNLVPLLVGNVALIFTKGDLRDVSEKIAKLKVVNPILMCPKYRSYDSYKTCSYMQSGQLPLGLTCCNQQSSEASEPFLVSSKFSPPQHCYLMRSRQFLLTSIWSPFLLLAGNL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme53901g00001 194 Gene3D - 9 128 IPR043141 -
Trme53901g00001 194 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 11 142 - -
Trme53901g00001 194 SUPERFAMILY Ribosomal protein L10-like 13 112 IPR043141 -
Trme53901g00001 194 Pfam Ribosomal protein L10 12 111 IPR001790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme53901g00001 Trme-Chr53901 263 847 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme53901g00001 7 157 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 49.091 4.21e-39 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme53901g00001 K02941 - jre:108980032 144.821