Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme53859g00001 ATGCGTCTTCAGAGGCATAAAATGGGTGTTGAGGATTTTGAGATGTTAACTATGATTGGAAAAGGTGCATTTGGTGAGGTCAGAGTGTGTAGGGAAAAGACTACAGAGCATGTATATGCAATGAAAAAGCTAAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTAGAACATGTCAGAGCTGAGAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGTTAAACTTTATTGTTCTTTCCAGGATGATGAGTATCTATATCTTATTATGGAGTATCTTCCGGGAGGGGATATGATGACTCTTCTTATGAGAAAGGATACATTGACCGAAGACGAAGCCCGATTTTATGTAGGAGAAACGGTTTTGGCTATCGAATCTATACATAAACACAATTATATACATAGGATTTCTAGACATGATATTGTTATGGTTGTGTTCCACAGAATCTTCAAGATGATCATATACTGA 468 0.3825 MRLQRHKMGVEDFEMLTMIGKGAFGEVRVCREKTTEHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRISRHDIVMVVFHRIFKMIIY 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme53859g00001 155 Pfam Protein kinase domain 14 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme53859g00001 155 SUPERFAMILY Protein kinase-like (PK-like) 4 135 IPR011009 -
Trme53859g00001 155 ProSiteProfiles Protein kinase domain profile. 13 155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme53859g00001 155 PANTHER SERINE/THREONINE-PROTEIN KINASE 9 135 - -
Trme53859g00001 155 Gene3D Phosphorylase Kinase; domain 1 1 134 - -
Trme53859g00001 155 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Trme53859g00001 155 SMART serkin_6 13 155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme53859g00001 155 FunFam Non-specific serine/threonine protein kinase 1 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme53859g00001 Trme-Chr53859 55 824 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme53859g00001 1 144 AGC Kinase Gene Family AT3G23310 88.194 3.36e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Trme53859g00001 Pkinase 1.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme53859g00001 K08790 - gmx:100783286 269.24