Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme53830g00001 CGACCGATCATTGTTGACTTCTCTCCTGTTACGGATTTTCGAGAAGCTACATGTAGGCAGTATGAAGAAAATGTATGCAATCGAGGTGGCTACTGCAACTTTATGCATCTAAAGAAGATTAGCAGAGATTTGCGAAAGCGATTATTTGGAAGAAGTAGTAGGCGTTGGAATGACCGCAGTGGAAGCAGAAGCCGGAGCCCTCCAAGGAATCGTAACTACGAGGGGCGTTCATATTCTGGTCGTGGTTCTGGTAGAAGGGATCTTGACAGGTCTCATGGCCACCATGGTAGGAGGCCAAGAAGCCGCAGTCCTCGTCATAGAGGAAAGCGAAGTAGAAGTCCAGCAGGCAGGGACAGGAGTCCCAATCCGGTCAGAGAAAGAGAAACTAGTGTAGAAAGGAGAGCAAGAATAGAACAATGGAACAGGGAGAAAGAAGTTGATGATTCTGGTATCAAGGACACTAAGAGTAACAATGATTATGAAGAGCCGAGCTTAAAAAATGGCAATGAGTATGAGTCAGGTAATCATCAGATATAG 537 0.4562 RPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRDLRKRLFGRSSRRWNDRSGSRSRSPPRNRNYEGRSYSGRGSGRRDLDRSHGHHGRRPRSRSPRHRGKRSRSPAGRDRSPNPVRERETSVERRARIEQWNREKEVDDSGIKDTKSNNDYEEPSLKNGNEYESGNHQI 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme53830g00001 178 MobiDBLite consensus disorder prediction 161 178 - -
Trme53830g00001 178 MobiDBLite consensus disorder prediction 114 160 - -
Trme53830g00001 178 MobiDBLite consensus disorder prediction 54 178 - -
Trme53830g00001 178 ProSiteProfiles Zinc finger C3H1-type profile. 12 39 IPR000571 GO:0046872
Trme53830g00001 178 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
Trme53830g00001 178 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 140 IPR009145 GO:0000398|GO:0003723|GO:0089701
Trme53830g00001 178 MobiDBLite consensus disorder prediction 91 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme53830g00001 Trme-Chr53830 158 819 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme53830g00001 zf-CCCH 0.00014 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme53830g00001 K12836 - gmx:100811622 223.402