Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5379g00001 ATGGAGAATATTTCATTCATCAGAGGGTTTCCTGATCAGGAAATAATGGAGGATCCTTCTTTCTGTCTTCATCAGTGGCATTTGAACTCTATTGATGAGTCTAACTCACTGCCAATAGCTTCTGCTTTTGGAGACACTTTACAGCACCATTCGTATATTTATCCAAATTTTAATCACAGAACTTCAGTTGAAACTGCTCCGAAACTAGATACTCAATTTGTTTCGTACCCAAATCTTGTTTCATTTGTCGATTTGAATCACGTAAATCAGTTTGGATTAATGAAGCCTAAGGATGAGATGGTTTGTCCTCAAAACAACAGGACATCTCCTTCTGACATGATACCTCAAGGAACCTTTGAGGCCAAAAAGTTAGCGACACGTCCTAAACTCTCTCTACCTCAAGACCACATAATAGCTGAAAGAAAGCGGCGTGAAAAGCTCAGCCAGCGCTTCATTGCTCTATCTGCCCTTGTTCCTGGACTACAAAAGATGGACAAAGCTACTGTTCTTGGAGATGCTATCAAGTACTTGAAGAAATTGCAAGAGAAGGTGAGGGATCTTGAGGAGGAACAAAACATGAAGAAAAATGTGGAAACTGTGGTGGTTGTGAAGAAATCTCAACTACGCAATGATGTTGAAAATTCTTCTGCAGAATCTGGCGGTCCCTTTGACGAGGAGCTGCCAGAAATTGAAGCAAGATTTTGTGATAGAAATGTCCTCATAAGAATTCACTGTGAGAAAAGCAATGGAGTTGTGGAAAAAACAATCCATGAAATTGAGAAACTTCATCTAAAAGTCACCAATAGCAGTGTCATGACATTTGGGAACTGTGCACTTGATATAACAATTATGGCTCAG 858 0.3974 MENISFIRGFPDQEIMEDPSFCLHQWHLNSIDESNSLPIASAFGDTLQHHSYIYPNFNHRTSVETAPKLDTQFVSYPNLVSFVDLNHVNQFGLMKPKDEMVCPQNNRTSPSDMIPQGTFEAKKLATRPKLSLPQDHIIAERKRREKLSQRFIALSALVPGLQKMDKATVLGDAIKYLKKLQEKVRDLEEEQNMKKNVETVVVVKKSQLRNDVENSSAESGGPFDEELPEIEARFCDRNVLIRIHCEKSNGVVEKTIHEIEKLHLKVTNSSVMTFGNCALDITIMAQ 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5379g00001 286 Coils Coil 170 200 - -
Trme5379g00001 286 PANTHER BHLH TRANSCRIPTION FACTOR 25 286 - -
Trme5379g00001 286 CDD bHLH_AtNAI1_like 131 205 - -
Trme5379g00001 286 Gene3D - 133 205 IPR036638 GO:0046983
Trme5379g00001 286 SMART finulus 137 186 IPR011598 GO:0046983
Trme5379g00001 286 Pfam Helix-loop-helix DNA-binding domain 135 181 IPR011598 GO:0046983
Trme5379g00001 286 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 195 IPR036638 GO:0046983
Trme5379g00001 286 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5379g00001 Trme-Chr5379 24 1246 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5379g00001 134 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 60.897 4.96e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme5379g00001 HLH 8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5379g00001 - - vun:114179595 349.747