Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme536097g00001 CTCTGCTCCGCAAAGAAGCAGAGGAAAAAGCCCGAGGCTCAAACGGGTGGAGCCCAGTTTCAAAGAAGGTGCAGCCACTGCCAGGTGCAGAAAACTCCACAGTGGAGAACCGGTCCGCTTGGACCGAAAACACTCTGTAACGCTTGTGGTGTTCGGTTTAAATCTGGTCGGCTTTTTCCGGAGTATAGACCGGCTTCAAGCCCGACGTTTTCCGGTGATATTCACTCGAACAGCCACCGTAAG 243 0.535 LCSAKKQRKKPEAQTGGAQFQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPASSPTFSGDIHSNSHRK 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme536097g00001 81 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 19 79 - -
Trme536097g00001 81 ProSitePatterns GATA-type zinc finger domain. 24 49 IPR000679 GO:0006355|GO:0043565
Trme536097g00001 81 Pfam GATA zinc finger 24 57 IPR000679 GO:0006355|GO:0043565
Trme536097g00001 81 FunFam GATA transcription factor 14 18 81 - -
Trme536097g00001 81 ProSiteProfiles GATA-type zinc finger domain profile. 22 54 IPR000679 GO:0006355|GO:0043565
Trme536097g00001 81 SMART GATA_3 18 68 IPR000679 GO:0006355|GO:0043565
Trme536097g00001 81 MobiDBLite consensus disorder prediction 62 81 - -
Trme536097g00001 81 PANTHER GATA TRANSCRIPTION FACTOR 7 81 - -
Trme536097g00001 81 CDD ZnF_GATA 23 72 IPR000679 GO:0006355|GO:0043565
Trme536097g00001 81 Gene3D - 17 69 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme536097g00001 Trme-Chr536097 31 273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme536097g00001 5 81 C2C2-Gata Transcription Factor Family AT4G36240 71.605 3.21e-36 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trme536097g00001 GATA 3.3e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme536097g00001 - - adu:107476627 157.918