Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme53607g00001 | CATCTATTGCAGTCGGTGAAGACGCGTGTCATAAAGAACAATTTAAATCCAGTTTGGAATGAAAGTCTAATGCTATCGATTCCTGAAAGCATCCCTCCTCTCAAAATTATTGTATATGACAAAGATTCATTCAAAAATGATGATTTTATGGGAGAGGCTGAAATAGATATTCAACCACTTGTTTCAGCAGCAAAAGCATATGAGAAATCTTCAATCAATGAGTCAATGCAGCTTGGAAAATGGGTAGCAAGTGGTGATAACACACTTGTGAAAGATGGAATAATCTCACTTGAAGAAGGAAAAGTGAGACAAGAAATCTCATTGAGGCTACAACATGTTGAGAGAGGTGTGCTTGAAATTGAGCTTGAATGTGTTCCTCTTACTCAATAG | 390 | 0.3692 | HLLQSVKTRVIKNNLNPVWNESLMLSIPESIPPLKIIVYDKDSFKNDDFMGEAEIDIQPLVSAAKAYEKSSINESMQLGKWVASGDNTLVKDGIISLEEGKVRQEISLRLQHVERGVLEIELECVPLTQ | 129 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme53607g00001 | 129 | SMART | C2_3c | 1 | 69 | IPR000008 | - | |
| Trme53607g00001 | 129 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 4 | 129 | IPR044518 | GO:0005096|GO:0005543 | |
| Trme53607g00001 | 129 | ProSiteProfiles | C2 domain profile. | 1 | 71 | IPR000008 | - | |
| Trme53607g00001 | 129 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 4 | 65 | IPR035892 | - | |
| Trme53607g00001 | 129 | Pfam | C2 domain | 4 | 65 | IPR000008 | - | |
| Trme53607g00001 | 129 | Gene3D | C2 domain | 1 | 128 | IPR035892 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme53607g00001 | Trme-Chr53607 | 1 | 528 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme53607g00001 | 4 | 129 | C2H2 Transcription Factor Family | AT4G05330 | 53.175 | 1.77e-44 | 146 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme53607g00001 | K12486 | - | gmx:100799376 | 230.335 |