Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme536007g00001 GAATCGGTTGTACCTCCTTGTGGGGCTTGCAAGTTCTTGAGGAGGAAGTGTAGTGGTGGGTGTATCTTTGCACCCTACTTTGGAACAGACCAAGGTGCGGCTAGCTTTGCGGCTGTGCACAAGGTGTTTGGTGCTAGCAATGTGTCCAAGCTATTGTCCAGTATTTCGACTAACCACCGCCATGAAGCAGCAGCAACTATTTTCTATGAGGCTCAGGCTAGACTATCCGATCCTGTTTACGGTTGTGTGTCCACCATTATTGCTTTGCAGCAA 273 0.4908 ESVVPPCGACKFLRRKCSGGCIFAPYFGTDQGAASFAAVHKVFGASNVSKLLSSISTNHRHEAAATIFYEAQARLSDPVYGCVSTIIALQQ 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme536007g00001 91 PANTHER LOB DOMAIN CONTAINING PROTEIN 5 91 - -
Trme536007g00001 91 ProSiteProfiles LOB domain profile. 5 91 IPR004883 -
Trme536007g00001 91 Pfam Lateral organ boundaries (LOB) domain 6 91 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme536007g00001 Trme-Chr536007 1 273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme536007g00001 6 91 AS2 family AT3G03760 82.558 1.25e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme536007g00001 LOB 2.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme536007g00001 - - aprc:113866578 157.918