Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme53538g00001 TACTATGGAAGCCTAGGTACAAGCAAGCCCACTCATTACCATGTTTTATGGGATGAACACAAGTTTACATCTGATGAATTGCAGAAACTTATATATGAGATGTGCTTCACCTTTGCAAGGTGCACTAAACCTGTATCTTTAGTACCTCCTGTCTATTATGCTGACCTTGCTGCTTATAGAGGACGATTATACCACGAAGCAAAGATTGGGATGCAACCTAAGAAGTCAAGAGCATCTTCATCTTCTAAAGATTCATCATCGGTTCCACCAACAGCTTCGTTTGAACAGGGATTTTACAGGTTGCATGCTGACCTGGAAAACATAATGTTCTTCATCTAA 339 0.4012 YYGSLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEAKIGMQPKKSRASSSSKDSSSVPPTASFEQGFYRLHADLENIMFFI 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme53538g00001 112 MobiDBLite consensus disorder prediction 71 92 - -
Trme53538g00001 112 Pfam Piwi domain 4 62 IPR003165 GO:0003676
Trme53538g00001 112 Gene3D - 1 112 IPR036397 GO:0003676
Trme53538g00001 112 MobiDBLite consensus disorder prediction 74 92 - -
Trme53538g00001 112 ProSiteProfiles Piwi domain profile. 1 66 IPR003165 GO:0003676
Trme53538g00001 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 4 72 - -
Trme53538g00001 112 SUPERFAMILY Ribonuclease H-like 3 66 IPR012337 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme53538g00001 3 101 Eukaryotic Initiation Factors Gene Family AT5G43810 45.631 1.06e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme53538g00001 K11593 - gmx:100783571 197.593