Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme53489g00001 ATGTCAAAGCTCGCTCAGCGGATGTCTGATTACTTCTGGTCTGGAGTTTGTCCTTCGTCAGCTTGCAAGTGGGACATGCTTCACATTAATAACATGGGCACCAGTGACGTGAGAATCATGTCCCGAAAAATTTCGGATCCCTCTGGTGAAAATCATAGCATTGTGCTAAGTGCTGCAACTTCTGTTTGGATGCCGGTGTCGCGACAAAGGGTGTTTGATTTCCTCCGTGATGCACGATTGAGAGGCGAGTGGGATGTTTTGTCCGGTGGTGGATCAATGCAGGAGATGGTCCATATTGCTACTGGACAAGCAATTGGAAATTCCGTTTCTATCCTCGGTGCTAATACTGCTGCGAATGGAAACGATGGCAACAGGCTATATCTGCAAGATTCATGGACCGATAGTTCTGGCTCGATGATTGTGTATTCTCCTATCGACATGCAATCCTTGAGCTTGGTGATGAGTGGTGGAGATTCTTCATCTGTTGCTCTTTCTCCTTCAGGCTTTTCAATTCTTCCGGATGGCCATTCAAGTAACAACAACATTGTTGGAACTTCAAGTGACGGTAGTAGCAGCAGTGGAAGC 585 0.4667 MSKLAQRMSDYFWSGVCPSSACKWDMLHINNMGTSDVRIMSRKISDPSGENHSIVLSAATSVWMPVSRQRVFDFLRDARLRGEWDVLSGGGSMQEMVHIATGQAIGNSVSILGANTAANGNDGNRLYLQDSWTDSSGSMIVYSPIDMQSLSLVMSGGDSSSVALSPSGFSILPDGHSSNNNIVGTSSDGSSSSGS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme53489g00001 195 SUPERFAMILY Bet v1-like 2 177 - -
Trme53489g00001 195 MobiDBLite consensus disorder prediction 175 195 - -
Trme53489g00001 195 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 1 182 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme53489g00001 Trme-Chr53489 56 929 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme53489g00001 1 177 Homeobox Transcription Factor Family AT3G61150 53.672 1.00e-56 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme53489g00001 K09338 - tpra:123904787 230.72