Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme53485g00001 ATGGCATTCTCAGGTGGGAAATCATCTGTATTGTTGGATGTAAAGCCATGGGATGATGAAACTGACATGAAGAAGCTTGAAGAAGCAGTGAGATCTGTTAAGTTGGAAGGGTTGTTTTGGGGTGCAT 127 0.4252 MAFSGGKSSVLLDVKPWDDETDMKKLEEAVRSVKLEGLFWGA 42
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme53485g00001 42 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 6 42 - -
Trme53485g00001 42 SUPERFAMILY eEF-1beta-like 6 41 IPR036219 -
Trme53485g00001 42 Gene3D - 4 42 IPR014717 -
Trme53485g00001 42 FunFam Elongation factor 1-beta 1 like 3 42 - -
Trme53485g00001 42 Pfam EF-1 guanine nucleotide exchange domain 9 41 IPR014038 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme53485g00001 Trme-Chr53485 770 896 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme53485g00001 6 42 Eukaryotic Initiation Factors Gene Family AT2G18110 86.486 2.86e-19 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme53485g00001 K03232 - csin:114311186 77.4109