Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5342g00001 ATGGGGAGCAGAGATATTGAGATTGAGAAGACTGACAATTTGATTAGAAGACAAGTTGCCTTCTCCGAGCGACGAAAGAGTTTGTTCAAGAAAGCSAAAGAATTGTCTATTCTTTGTGATGCGGAGGTYGGTGTCATCGTATTTTCTAGCACTGGCAARCTCTATSAGTTCTCAAGRCCAAG 182 0.4066 MGSRDIEIEKTDNLIRRQVAFSERRKSLFKKAKELSILCDAEVGVIVFSSTGKLYZFSRP 60
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5342g00001 60 ProSiteProfiles MADS-box domain profile. 1 60 IPR002100 GO:0003677|GO:0046983
Trme5342g00001 60 SUPERFAMILY SRF-like 3 59 IPR036879 GO:0003677|GO:0046983
Trme5342g00001 60 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 59 - -
Trme5342g00001 60 Gene3D - 13 60 IPR036879 GO:0003677|GO:0046983
Trme5342g00001 60 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trme5342g00001 60 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trme5342g00001 60 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trme5342g00001 60 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trme5342g00001 60 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5342g00001 Trme-Chr5342 452 633 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5342g00001 1 58 MADS-box Gene Family AT3G57390 67.241 2.05e-21 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme5342g00001 SRF-TF 4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5342g00001 - K09264 tpra:123891316 117.857