Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme53305g00001 ATGATGAAATCAGACATGGAAGTCGAGCAGAGAAAAAAGTCGAAGAAGCCAGCACAACAGGCCAACTCCAGAAAAGGTTGTATGAAAGGTAAAGGAGGCCCTGAAAACGCGAGTTGCCCTTACAAGGGTGTGAGACAGAGAACATGGGGCAAATGGGTTGCTGAAATCCGTGAGCCCAATCGTGGCGCTCGTCTTTGGCTTGGGACATTTAAAACATCTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANGTAAGCTTTATGGATCAAGGGCCAAGCTCAATCTACCTGAAATCTCTATGTCTAAGAAATCTCAGGGTCAACAATCTCTCCCCGACCCTCAAAATGTCAAAACGGGAGATTCGTACCCGCCTCAAATTAATCACAGTGTAGACATGGTCACGAGTTCCGATTTCAATGCGAACCCTAACCCTACAATACCGATGGCTTCTCAACCATTACGCAACAATGATTGCACACCCTCTTTACCCTTGGATGGCAACCCTAATCCAATTGATCCAACCTTTGAGGATTTT 537 0.4302 MMKSDMEVEQRKKSKKPAQQANSRKGCMKGKGGPENASCPYKGVRQRTWGKWVAEIREPNRGARLWLGTFKTSXXXXXXXXXXXXKLYGSRAKLNLPEISMSKKSQGQQSLPDPQNVKTGDSYPPQINHSVDMVTSSDFNANPNPTIPMASQPLRNNDCTPSLPLDGNPNPIDPTFEDF 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme53305g00001 179 MobiDBLite consensus disorder prediction 1 42 - -
Trme53305g00001 179 Pfam AP2 domain 41 72 IPR001471 GO:0003700|GO:0006355
Trme53305g00001 179 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Trme53305g00001 179 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Trme53305g00001 179 Gene3D AP2/ERF domain 40 98 IPR036955 GO:0003700|GO:0006355
Trme53305g00001 179 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Trme53305g00001 179 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Trme53305g00001 179 MobiDBLite consensus disorder prediction 98 179 - -
Trme53305g00001 179 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
Trme53305g00001 179 MobiDBLite consensus disorder prediction 1 16 - -
Trme53305g00001 179 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 12 138 - -
Trme53305g00001 179 MobiDBLite consensus disorder prediction 99 164 - -
Trme53305g00001 179 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme53305g00001 Trme-Chr53305 395 931 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme53305g00001 15 98 AP2-EREBP Transcription Factor Family AT1G75490 71.429 2.71e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme53305g00001 AP2 1.4e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme53305g00001 - - gmx:100790057 193.741