Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme53297g00001 AGAAATGGCCAACCATCTCCAAATCTTTCATGGTCAACCAGGCTGAAAATAGCCAAAGGAACAGCCAGGGGTTTAGCTTATCTCCATGAATGCAGTCCAAGAAAATTTGTTCACGGCGACCTCAAACCTTCCAATATCCTCCTTGACACAGACTTCCAACCTCTCATTTCTGATTTTGGTCTTAACCGGCTGATCAGCATCACTGGAAACAATCCCTCCACCGGCGGTTTTATGGGTGGAGCTCTTCCTTACTTGAAATCATCACAAACCGAACGAATCAACAACTATAAAGCACCTGAAGCTAAAGTACCAGGCTGCAGACCCACCCAAAAATGGGATGTGTATTCATTTGGTGTTGTATTACTTGAATTGCTAACTGGTAAGTCCCCGGATTCTTCTCCAGGAGCATCAACTTCTGTGGAAGTACCTGACTTGGTTAGGTGGGTAAAGAAAGGGTTTGAACAAGAAAGCCCTTTATCTGAAATGGTTGATCCATCACTTCTTCAAGAAATTCATGCCAAGAAAGAAGTATTAGCTGTGTTCCATGTAGCACTATCATGCACTGAGGGAGACCCTGAGGTCAGGCCTAGAATGA 595 0.442 RNGQPSPNLSWSTRLKIAKGTARGLAYLHECSPRKFVHGDLKPSNILLDTDFQPLISDFGLNRLISITGNNPSTGGFMGGALPYLKSSQTERINNYKAPEAKVPGCRPTQKWDVYSFGVVLLELLTGKSPDSSPGASTSVEVPDLVRWVKKGFEQESPLSEMVDPSLLQEIHAKKEVLAVFHVALSCTEGDPEVRPRM 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme53297g00001 198 FunFam Os07g0541700 protein 2 79 - -
Trme53297g00001 198 SUPERFAMILY Protein kinase-like (PK-like) 7 198 IPR011009 -
Trme53297g00001 198 Gene3D Transferase(Phosphotransferase) domain 1 2 198 - -
Trme53297g00001 198 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 6 198 IPR046959 -
Trme53297g00001 198 ProSitePatterns Serine/Threonine protein kinases active-site signature. 36 48 IPR008271 GO:0004672|GO:0006468
Trme53297g00001 198 Pfam Protein kinase domain 16 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme53297g00001 198 ProSiteProfiles Protein kinase domain profile. 1 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme53297g00001 Trme-Chr53297 337 931 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme53297g00001 1 198 Receptor kinase-like Gene Family AT1G67510 71.226 2.37e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme53297g00001 Pkinase 2.8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme53297g00001 - - gmx:100795021 373.629