Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme53291g00001 ACTGGCGGTACTTATAGTGGGGTCCAACCAGATGGCTCAAAGGTTGCTGTTAAGAGATTAAAGAGGTCAAGCTTTAAGAGGAAAAAGGAGTTCTATTCCGAAATTGGCAGGGTTGCAAGGCTTCGACATCCAAATCTGGTGGTTGTGATGGGCTGCTGTTATGATCATGGTGACCGCTACATTGTTTATGAGTTTGTAGCTAATGGGCCCTTAGATAAATGGCTACATCACATACCAAGGGGAGGTCGCAGCTTAGATTGGGCTATGAGGATGAAAATTGCAACAACGCTTGCTCAAGGAATTGCGTCATTATCACTTCATCGTTGCAGTTTGTATGCATTCTTAACAATTTCTACTGCACGGCCATTGGCCACTTTGGCTAATTTGCAAGATGCAAATTACATATGGGGWGGGGACATTTAA 423 0.4374 TGGTYSGVQPDGSKVAVKRLKRSSFKRKKEFYSEIGRVARLRHPNLVVVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIASLSLHRCSLYAFLTISTARPLATLANLQDANYIWGGDI 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme53291g00001 140 ProSiteProfiles Protein kinase domain profile. 1 140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme53291g00001 140 Pfam Protein tyrosine and serine/threonine kinase 11 109 IPR001245 GO:0004672|GO:0006468
Trme53291g00001 140 SUPERFAMILY Protein kinase-like (PK-like) 3 105 IPR011009 -
Trme53291g00001 140 Gene3D Transferase(Phosphotransferase) domain 1 1 112 - -
Trme53291g00001 140 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme53291g00001 Trme-Chr53291 1 554 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme53291g00001 1 104 Receptor kinase-like Gene Family AT1G52310 77.885 4.72e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Trme53291g00001 PK_Tyr_Ser-Thr 9.7e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme53291g00001 - - gmx:100794353 194.897