Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme53282g00001 AATGAAATGATGTCGGATGTTGAATTTGATTGTTCAAAGGCAGTAGAGATGGGATACATATCACCAAAATTACTTGAACTTATTAAACTCTTTGAAACATTTGGAGAACCTAGTCAGTTAATGTGCCTCATTTTTGTCGAAAGAATCATTACAGCTAAGGTGATTGAAAGATTTGTGAAAAAAGTTTCCCAGGTATCTCATCTCACAGTTGCCTATGTAACTGGAAGCAATACATCAACTGATGCACTGGCTCGTAATAGGCAGAAAGAAGTATTGGATTCTTTCCGATCCGGAAAGGTCAATCTTCTATTTACTACTGATGTCCTTGAGGAAGGAATTCACGTGCCAAACTGCTCGTGTGTCATACGCTTTGACCTCCCCACGACA 387 0.3902 NEMMSDVEFDCSKAVEMGYISPKLLELIKLFETFGEPSQLMCLIFVERIITAKVIERFVKKVSQVSHLTVAYVTGSNTSTDALARNRQKEVLDSFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPTT 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme53282g00001 129 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 26 129 IPR001650 -
Trme53282g00001 129 PANTHER DICER-RELATED 7 129 - -
Trme53282g00001 129 Gene3D - 12 129 IPR027417 -
Trme53282g00001 129 SMART helicmild6 49 129 IPR001650 -
Trme53282g00001 129 Pfam Helicase conserved C-terminal domain 38 128 IPR001650 -
Trme53282g00001 129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 128 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme53282g00001 41 128 Eukaryotic Initiation Factors Gene Family AT1G72730 35.165 2.54e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme53282g00001 K11592 - qsa:O6P43_019158 198.364