Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme532735g00001 ATGGCAAAGGATCTAACAATAGAAAACACAGCAGGACCTGATGCACACCAAGCAGTGGCATTCAGATTAGACAGTGATCTTTCTGTAATTGAGAATTGTGAATTCTTAGGTAACCAAGATACTCTTTATGCTCATTCCCTACGCCAATTGTACAAATCATGCCGCATTGAAGGCAACGTGGATTTCATCTTTGGAAACTCAGCTACAATCTTCCAAGACTGTC 223 0.4081 MAKDLTIENTAGPDAHQAVAFRLDSDLSVIENCEFLGNQDTLYAHSLRQLYKSCRIEGNVDFIFGNSATIFQDC 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme532735g00001 74 Pfam Pectinesterase 1 74 IPR000070 GO:0030599|GO:0042545
Trme532735g00001 74 PANTHER PECTINESTERASE 1 74 - -
Trme532735g00001 74 Gene3D - 1 74 IPR012334 -
Trme532735g00001 74 SUPERFAMILY Pectin lyase-like 1 74 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme532735g00001 Trme-Chr532735 1 223 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme532735g00001 1 74 Carbohydrate Esterase AT5G64640 86.486 4.38e-42 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme532735g00001 - - gmx:100819675 149.443