Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme53272g00001 ATGCTTCTTCCTGAGTATAGCAATGGCAGTACATGGCAAAGCATTAAGAAACCGCGTTTTAGAAAATCTCCGGTTCGTCCAGGAGAAATACAAGAATGTGGAGACTCAAGCTGTTACAACAATTCCTTGCATTCCAAGAAATTTTTGGTTGTTGACGATACTAAAATTTTGCGTATGTTAGCTACAAATATATTGGTTTCGCTCGGTGCAACTGTCGAGCAATGTGAGAATGGAGAAGAGGCTGTGAAGCTAGTTGATGAAGGACTAAAAAGGGATTATCCTAATCTTCCTTATGATTACATCTTAATGGACTGTCAGATGCCGGTGATGAATGGATTTGAGGCAACAAGACAGATACGAGAGATGGAGAAGTCGTACGGTGTTCACATTCCTATCATTGCGTTAACTGCAGATGTTGATAGTTCGACGGAAGTGACTGGAATGGACTTTCATATAGAGAAGCCTCTTAGAAAAGAGCATTTACTTGAAGCTGTTAGATACTTCAATAGTAGAGTGACATGA 522 0.4004 MLLPEYSNGSTWQSIKKPRFRKSPVRPGEIQECGDSSCYNNSLHSKKFLVVDDTKILRMLATNILVSLGATVEQCENGEEAVKLVDEGLKRDYPNLPYDYILMDCQMPVMNGFEATRQIREMEKSYGVHIPIIALTADVDSSTEVTGMDFHIEKPLRKEHLLEAVRYFNSRVT 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme53272g00001 173 CDD REC_hyHK_CKI1_RcsC-like 48 165 - -
Trme53272g00001 173 PANTHER TWO-COMPONENT HISTIDINE KINASE 40 166 - -
Trme53272g00001 173 Pfam Response regulator receiver domain 49 165 IPR001789 GO:0000160
Trme53272g00001 173 SUPERFAMILY CheY-like 45 169 IPR011006 -
Trme53272g00001 173 Gene3D - 32 170 - -
Trme53272g00001 173 SMART REC_2 46 165 IPR001789 GO:0000160
Trme53272g00001 173 ProSiteProfiles Response regulatory domain profile. 47 169 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme53272g00001 Trme-Chr53272 31 797 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme53272g00001 15 171 Histidine Kinase Gene Family AT2G47430 40.476 2.53e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme53272g00001 Response_reg 4.5e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme53272g00001 - - cam:101504256 256.914