Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme53268g00001 | AGCTTGCAGGTTGTTCCGGTGCAGAATAAAGGGTCATTGAGAGTTTTGCTCCTTCATGGAAATTTAGATATATGGGTTCATGAAGCCAAAAATCTTCCGAATATGGACATGTTCCACAAAACATTGGGGGATATGTTTGGTAAATTACCTGGTAGTGTGAGCAATAAAATTGAAGGAACAATGCATAAGAAGATTACCAGTGATCCTTATGTTTCGATTTCAGTGTCAAATGCCGTAATTGGGAGGACTTTTGTCATTAGCAACTCTGAAAATCCTGTTTGGAGTCAACATTTTTATGTTCCTGTTGCACATAACGCCGCTGAAGTGCACTTTGTTGTTAAAGACAGTGATGTTGTGGGTTCACAGCTCATTGGTATTGTAGCGATTCCAGTGGAACAAATATACTCAGGGGAAATAGTTGAAGGAGCTTACTCTGTCCTGAATAGTAATGGGAAACCTTGTAAGCAAGGTGCTGTACTGAGCCTATCCATTCAGTACATCCCAATGGAGAAACTAAGCTTTTATCATCAAGGAGTTGGAGCAGGGCCTGAATATATCGGAGTTCCTGCCACTTATTTTCCTTTGAGGAAAGGTGGAAATGTTACTCTATATCAAGATGCTCATGTTCCAGATGGAATCCTCCCTAATGTGGTGCTAGATAGTGGGATGTTTTATGTGAACGGAAAGTGTTGGCATGACATCTTTGATGCCATAAGTCAAGCTCGCCGCTTGATTTATATTACAGACAAAGTCACAAGAAGGAGTAAGAGTGCTTCTCCTTATTTGGGATGA | 792 | 0.4066 | SLQVVPVQNKGSLRVLLLHGNLDIWVHEAKNLPNMDMFHKTLGDMFGKLPGSVSNKIEGTMHKKITSDPYVSISVSNAVIGRTFVISNSENPVWSQHFYVPVAHNAAEVHFVVKDSDVVGSQLIGIVAIPVEQIYSGEIVEGAYSVLNSNGKPCKQGAVLSLSIQYIPMEKLSFYHQGVGAGPEYIGVPATYFPLRKGGNVTLYQDAHVPDGILPNVVLDSGMFYVNGKCWHDIFDAISQARRLIYITDKVTRRSKSASPYLG | 263 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme53268g00001 | 263 | PANTHER | PHOSPHOLIPASE D | 12 | 249 | IPR015679 | - | |
| Trme53268g00001 | 263 | Gene3D | C2 domain | 15 | 156 | IPR035892 | - | |
| Trme53268g00001 | 263 | FunFam | Phospholipase D delta | 15 | 162 | - | - | |
| Trme53268g00001 | 263 | SMART | C2_3c | 21 | 143 | IPR000008 | - | |
| Trme53268g00001 | 263 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 18 | 168 | IPR035892 | - | |
| Trme53268g00001 | 263 | CDD | C2_plant_PLD | 15 | 167 | - | - | |
| Trme53268g00001 | 263 | Pfam | C2 domain | 20 | 145 | IPR000008 | - | |
| Trme53268g00001 | 263 | ProSiteProfiles | C2 domain profile. | 1 | 144 | IPR000008 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme53268g00001 | Trme-Chr53268 | 1 | 872 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme53268g00001 | 10 | 248 | Phospholipase D Gene Family (Wang group) | AT2G42010 | 79.079 | 2.16e-132 | 399 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme53268g00001 | K01115 | - | gmx:100801286 | 465.692 |