Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme532210g00001 GTTAGGACCCATCTTCGTAACATGATTATTGTTCCTGAGATGATTGGGAGTATTATTGGAGTGTACAATGGGAAGACATTTAACCAGGTTGAAATCAAACCTGAGATGATTGGTCATTACCTTGCTGAGTTCTCAATTTCATACAAACCAGTTAAGCATGGTAGACCTGGTATTGGTGCTACTCACTCCTCCAGGTTCATTCCTCTCAAGTGA 213 0.4085 VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme532210g00001 70 Pfam Ribosomal protein S19 1 53 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trme532210g00001 70 Hamap 30S ribosomal protein S19 [rpsS]. 1 59 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trme532210g00001 70 PRINTS Ribosomal protein S19 family signature 3 22 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trme532210g00001 70 PRINTS Ribosomal protein S19 family signature 35 50 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trme532210g00001 70 PRINTS Ribosomal protein S19 family signature 23 35 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trme532210g00001 70 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 1 70 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trme532210g00001 70 Gene3D 30s Ribosomal Protein S19; Chain A 1 70 IPR023575 GO:0003735|GO:0005840|GO:0006412
Trme532210g00001 70 SUPERFAMILY Ribosomal protein S19 1 54 IPR023575 GO:0003735|GO:0005840|GO:0006412
Trme532210g00001 70 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 1 70 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trme532210g00001 70 ProSitePatterns Ribosomal protein S19 signature. 23 47 IPR020934 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme532210g00001 Trme-Chr532210 1 213 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme532210g00001 1 70 Cytoplasmic Ribosomal Protein Gene Family AT1G04270 98.571 1.76e-47 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme532210g00001 K02958 - dct:110110192 145.591