Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme53174g00001 AATGATAGTGATGGAAAACGGACTAAAGCATTGGGGAACAGGAATGAAGGTGGTGATGGTAAAGTTGAAGGAGAAGCCAGTTCAGGAAAGCCTGCGGAGCAAAGCAGTAAGCCACCTCCTCCCGACCCTCCTAAGCAAGATTACATCCACGTGCGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAACGCGTAATTTACTCTTACTTACTCATCTTTTAA 231 0.4675 NDSDGKRTKALGNRNEGGDGKVEGEASSGKPAEQSSKPPPPDPPKQDYIHVRARRGQATDSHSLAERVIYSYLLIF 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme53174g00001 76 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 6 68 IPR024097 GO:0006355
Trme53174g00001 76 MobiDBLite consensus disorder prediction 1 23 - -
Trme53174g00001 76 MobiDBLite consensus disorder prediction 47 61 - -
Trme53174g00001 76 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme53174g00001 Trme-Chr53174 277 507 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme53174g00001 2 67 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 55.556 6.75e-13 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme53174g00001 - - jcu:119369479 104.375