Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme53160g00001 | AGTGAACAAGATGCTGCAATTTTAGTACCAGGAGACATAATCAGCATTAAGTTAGGAGATATCATTCCTGCTGATGCGCGTCTTCTCGAGGGAGATCCTTTAAGTGTTGATCAGTCTGCATTAACAGGAGAGTCTCTTCCTGTTACAAAGAGTTCCTCGGATGAAGTGTTTTCAGGATCAACGGTTAAGAAGGGTGAGATTGAAGCAGTTGTGATTGCTACTGGTGTGCACACTTTTTTCGGTAAAGCAGCTCATTTGGTTGATAGTACAAACCAAGTTGGACATTTTCAGAAAGTGCTAACAGCTATTGGTAACTTCTGCATTTGTTCGATTGCTATTGGAATACTCATTGAGCTTATTGTGATGTATCCGATACAACATCGCAAGTATAGAGACGGAATCGACAATCTTTTGGTGCTATTAATTGGCGGAATTCCAATTGCTATGCCAACTGTTTTGTCTGTTACTATGGCTATCGGTTCTCATAGGCTTTCGCAGCAAGGCGCTATAACGAAAAGAATGACTGCTATTGAAGAAATGGCTGGAATGGATGTTCTTTGTAGTGATAAAACCGGAACTCTCACTTTGAATAAGCTTAGTGTTGATCGAAACTTGATTGAGGTTTTCGCCAAGGGAATTGAGAAGGAATATGTGATGCTTCTAGCAGCTAGAGCTTCTAGAACTGAAAATCAAGATGCTATAGATGCTGCAATTGTTGGAATGCTTGCTGATCCAAAAGAGGCAAGAGCTGGTATAAGGGAAGTACATTTTCTTCCATTCAATCCTGTAGACAAGAGGACTGCTTTAACTTATATTGATTCCGATG | 826 | 0.4031 | SEQDAAILVPGDIISIKLGDIIPADARLLEGDPLSVDQSALTGESLPVTKSSSDEVFSGSTVKKGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGILIELIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDRNLIEVFAKGIEKEYVMLLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSD | 275 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme53160g00001 | 275 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 193 | 272 | IPR023299 | GO:0000166 | |
| Trme53160g00001 | 275 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 1 | 272 | - | - | |
| Trme53160g00001 | 275 | FunFam | - | 199 | 265 | - | - | |
| Trme53160g00001 | 275 | PRINTS | P-type cation-transporting ATPase superfamily signature | 187 | 201 | - | - | |
| Trme53160g00001 | 275 | PRINTS | P-type cation-transporting ATPase superfamily signature | 37 | 51 | - | - | |
| Trme53160g00001 | 275 | NCBIfam | HAD-IC family P-type ATPase | 4 | 204 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Trme53160g00001 | 275 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 87 | 182 | IPR023298 | - | |
| Trme53160g00001 | 275 | FunFam | Phospholipid-transporting ATPase IC | 184 | 196 | - | - | |
| Trme53160g00001 | 275 | FunFam | Plasma membrane ATPase | 1 | 74 | - | - | |
| Trme53160g00001 | 275 | Gene3D | - | 201 | 275 | IPR023299 | GO:0000166 | |
| Trme53160g00001 | 275 | SUPERFAMILY | Calcium ATPase, transduction domain A | 5 | 87 | IPR008250 | - | |
| Trme53160g00001 | 275 | Pfam | E1-E2 ATPase | 4 | 166 | - | - | |
| Trme53160g00001 | 275 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 189 | 195 | IPR018303 | - | |
| Trme53160g00001 | 275 | Gene3D | - | 65 | 200 | - | - | |
| Trme53160g00001 | 275 | Gene3D | - | 1 | 64 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme53160g00001 | Trme-Chr53160 | 1 | 931 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme53160g00001 | 1 | 275 | Primary Pumps ATPases | AT2G18960 | 91.273 | 0.0 | 518 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme53160g00001 | K01535 | - | gmx:100794372 | 522.316 |