Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme53096g00001 ATGGCACAACAGAAGTCGTCCATCAAATACTATGATGCCAATGATGCAGATACCGAAACTTTCCACGATGCCTACAATGATAGTAACCGCCATAACAACATATCCCTTGCTTCATGGGAAGGATGTTTTCTGAAATCCTTCGATGAAATGGATGATCATCTTGCTCAGGAAGTTAACACTGATAGCTATTGCAGTGGTTGCACAGCTGTAACTCTAATTAAACAGGGTGACCAGTTGATAGTCGGAAATTTGGGCGATTCTCGTGCAGTTCTTTGCATGAAGGATAGAGATCAACTTATTTCTGTTCAACTTACCGTTGACTTGAAACCGGATATTCCAAGTA 343 0.4111 MAQQKSSIKYYDANDADTETFHDAYNDSNRHNNISLASWEGCFLKSFDEMDDHLAQEVNTDSYCSGCTAVTLIKQGDQLIVGNLGDSRAVLCMKDRDQLISVQLTVDLKPDIPS 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme53096g00001 114 Gene3D - 1 114 IPR036457 -
Trme53096g00001 114 ProSiteProfiles PPM-type phosphatase domain profile. 7 114 IPR001932 -
Trme53096g00001 114 PANTHER PROTEIN PHOSPHATASE 26 111 IPR015655 GO:0004722|GO:0006470
Trme53096g00001 114 Pfam Protein phosphatase 2C 28 111 IPR001932 -
Trme53096g00001 114 SUPERFAMILY PP2C-like 28 113 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme53096g00001 Trme-Chr53096 1 547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme53096g00001 39 113 PP2C-type Phosphatase Gene Family AT1G03590 61.842 1.75e-25 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme53096g00001 - - mtr:11405988 199.134