Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme53050g00001 ATGCTTGAAGTATTAACCGAGGTGCATTGCCAATTTTCAGCTGGAATGCAGACAGTGGCGGTTATTCCTGTGCTTCCCCACGGGGTTGTTCAATTTGGTTCTTTCTTGCCGATAATGGAGAATATCGGATTTGTGAATGATGTGAAGAACTTGATCTTTCAATTGGGATGTGTTCCTGGTGCCCTTCTATCTGAAGACTATTCGGCAAGACTTTCTAATGGATCCGTGACTGGTTGTGTGCCTGTGTCATTTGATCCACAAATCATTACCTCAAACTTCACTCCCTCAGTAGCTAATGGATCTAACCAACCGAGTAATTCATCGCATGGTCCAATGTCTGTTGCTTCTCAACTACCTCCTTTTCGAAGTCGAGAAATAAATAGTCACCGTGGTACTGTATTAACAACTCAATCCCAAAACCTAAACCAGATATTTGATAGCCTTAGTCAACCAAAGGCTCAACGAGAGAATACAACTGTTAAGGCCGAAGCTGAAATGATACCTGCAAATCTCGATTCTTCATCTCTGCAACGGCGTTCTGTTTCATATAATGCAAGATCGACATTCAATGAATTAACTGATTCAAATGTATCCAATCTGAATGGTTTCAGCCATAAACATATGGAGCAACAAAT 635 0.411 MLEVLTEVHCQFSAGMQTVAVIPVLPHGVVQFGSFLPIMENIGFVNDVKNLIFQLGCVPGALLSEDYSARLSNGSVTGCVPVSFDPQIITSNFTPSVANGSNQPSNSSHGPMSVASQLPPFRSREINSHRGTVLTTQSQNLNQIFDSLSQPKAQRENTTVKAEAEMIPANLDSSSLQRRSVSYNARSTFNELTDSNVSNLNGFSHKHMEQQ 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme53050g00001 211 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 12 51 IPR025610 -
Trme53050g00001 211 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 3 203 IPR043561 GO:0003700|GO:0006355
Trme53050g00001 211 MobiDBLite consensus disorder prediction 95 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme53050g00001 Trme-Chr53050 1 879 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme53050g00001 3 83 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 69.136 4.51e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme53050g00001 - - lja:Lj3g3v1262250.1 256.529