Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme53046g00001 ATGCTGGCTGCAAAGAATTTATCTTACTATTTTCATGTTATAGCAAATAATGGTGCTGGAAGGACTCCACTGAATTGGGAAACTAGGTCAACCATTGCCCTTGGTGCTGCCCAAGGGATTGCATACCTACACTCACAAGGTCCAACATCTTCCCATGGAAACATCAAGTCATCAAACATCCTTCTCACCAAATCTTACGAGCCTCGTGTCTCCGACTTCGGCCTCGCGTATCTCGCTCTTCCGACCGCTACGCCCAACCGAATTTCTGGCTACCGTGCACCAGAGGTCACTGATGCGCGCAAAGTATCCCAAAAAGCAGATGTCTACAGCTTCGGTATAATGCTTTTGGAGCTACTTACAGGGAAGGCGCCTACTCATTCTTCGTTGAANNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTTTTTGACATGGAGCTTCTCAGGTACCAAAGTGTTGAAGAGGAAATGGTGAATCTATTGCAGCTTGCTCTTGAATGTACTGCTCAATATCCCGATAAGAGACCTTCGATGGATGTGGTTGCTAGCAAGATTGAGAAAATTTGT 597 0.4087 MLAAKNLSYYFHVIANNGAGRTPLNWETRSTIALGAAQGIAYLHSQGPTSSHGNIKSSNILLTKSYEPRVSDFGLAYLALPTATPNRISGYRAPEVTDARKVSQKADVYSFGIMLLELLTGKAPTHSSLXXXXXXXXXXXXXXXXXXXXXXXFDMELLRYQSVEEEMVNLLQLALECTAQYPDKRPSMDVVASKIEKIC 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme53046g00001 199 Gene3D Transferase(Phosphotransferase) domain 1 5 199 - -
Trme53046g00001 199 SUPERFAMILY Protein kinase-like (PK-like) 14 194 IPR011009 -
Trme53046g00001 199 ProSiteProfiles Protein kinase domain profile. 1 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme53046g00001 199 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 5 198 IPR046959 -
Trme53046g00001 199 Pfam Protein kinase domain 26 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme53046g00001 199 SMART serkin_6 2 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme53046g00001 199 Coils Coil 129 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme53046g00001 Trme-Chr53046 1 597 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme53046g00001 2 198 Receptor kinase-like Gene Family AT5G16590 55.051 6.63e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme53046g00001 Pkinase 2.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme53046g00001 - - gmx:100801103 288.885