Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme53035g00001 ACTATTAGGGAGTGGCTTTTCTTTGATAAGTCTCGAAGAGCATTTGAGAGTGGAAACAGAAAACAAAGGTCATTGCCTGACTATAATGAGCGGGGATGGCATGAATCTAGAAAGCAAGTGATGAATGAGTTTGGAGGGCTGAAGAGATCCTATTACATGGATCCACAACCACGAAACCATTTTGAGTGGCACCTTTATGAGTATGAAATTAGAAAATGTGATTCATGTGCCTTATATCGGTTGGAATTAAAGCTTGTTGATGGGAAGAAGAGCTCCAAGGAAAAGATAACAAGTGATTCTGTTACTAATCTGCAGAAGCGGATAGGAAGACGACTCTCTGCCGAGTTTCCCTATGATAGCAGACATTCTGCAAAGGGCAGAACCAAACCTGATGCCAAGGCTGACATAGGTGGTGTCTATACAGCTTCAAAAATTCACCATCACCATATGACTATCTTGTTGAGAACACAAACGACTATTATGTAA 486 0.4095 TIREWLFFDKSRRAFESGNRKQRSLPDYNERGWHESRKQVMNEFGGLKRSYYMDPQPRNHFEWHLYEYEIRKCDSCALYRLELKLVDGKKSSKEKITSDSVTNLQKRIGRRLSAEFPYDSRHSAKGRTKPDAKADIGGVYTASKIHHHHMTILLRTQTTIM 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme53035g00001 161 PANTHER TRANSCRIPTION FACTOR VOZ1 1 142 IPR039277 GO:0006355|GO:0048578
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme53035g00001 Trme-Chr53035 2 487 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme53035g00001 1 139 VOZ-9 Transcription Factor Family AT1G28520 70.270 1.15e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF VOZ Trme53035g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme53035g00001 - - pvu:PHAVU_003G073700g 246.514