Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5301g00001 ATGGGTGGGTCGGGTAAAACAACCGCAGCTAAAGCCATCTACCACCGGCTACATGGGAAATTTTTGAATACAAGTTTCATTGAAAATTTTAGAGAAGTTTGTGAAGATGGAAATAGCGGGATTATTCATTTACAACAACAACTTCTTTCTGATATCCTGAACACAAATGTGATGATAAATAGCATAGCAGAGGGGGAAATGATGATCAGTGAAAGATTTCAGGGGAAAAAGGTACTTGTTGTACTTGATGATGTGATCCCATCTGAACAGCTAGAAGCGCTATGTGCAAATCGTAATTTGTTTGGTCCTGGAAGTGTATTAATTATTACGACTGGAGATGTACACCTACTTGAGTTATCTAAGGTTGATTATGTGTATACAATGAAGGAAATGGACGAAAATGAGTCCCTTGAGCTTTTCAGCTGGCATGCTTTTCGACAACCTAGTCCAATAAAAGACTTCAATGAACTCTCAAGGAACACAGTTGCTTATTGCAGAGGATTACCACTGGCTCTTGAAGTTGTTGGTTCTTACTTATTTGATAGGACAAAACAAGAATGGATGAGTGTACTATCAAAGTTAGAGAGAATTTCCAATGATCAAGTGCAAGAGATACTGAGAATAAGCTACGATGGTTTAATGGAAGATATGGTAAAGCATATATTTCTTGACATATCTTGTTTCTTTATCGGCATGGATAGAGCGGATGCTACACGGATACTAATTGCCTGTGGATTTGATGCTGATATTGGAATAGACATCCTCATAGAGCGGAGCCTTGTAAAAATTGAAAAGAATAACAAACTTGGAATGCATGATTTAATAAGAGACATGGGAAGAGAAATTGTTCGCAAAAGTTCAGCAAAACACCCTGGGAAGCGTAGTCGATTATGGTCTCACAAGGATGCACATGATATTTTGACCAAAAATTTGGGACCAGAAAATGTAGAGGGATTGGTTTTGAATGCGCAAAGAACTGACAGAGTTTGCTTCAGTACTGATGCTTTCAAGAAGATGAAGAACCTCAGACTTCTACAGCTTGATCATGTTGACCTCACTGGAGATTATAGTTACTTTTCTAAACAACTCAATATTAAACAAGTATGGAATGGAACCAAGGTGCTGGTGAATCTTAAAATTCTCAACATCAGTCATTCAAGATACTTGAAAAGCTCCCCAGACTTCTCAAAAATGCCAAATCTTGAAAAGCTCATTATGAAGGATTGTCCATGTTTGGCCGAAATACACCCATCCATTGGAGATCTCAAGAATCTTATTCTGATAAATTTGAAGGACTGTACAG 1303 0.3784 MGGSGKTTAAKAIYHRLHGKFLNTSFIENFREVCEDGNSGIIHLQQQLLSDILNTNVMINSIAEGEMMISERFQGKKVLVVLDDVIPSEQLEALCANRNLFGPGSVLIITTGDVHLLELSKVDYVYTMKEMDENESLELFSWHAFRQPSPIKDFNELSRNTVAYCRGLPLALEVVGSYLFDRTKQEWMSVLSKLERISNDQVQEILRISYDGLMEDMVKHIFLDISCFFIGMDRADATRILIACGFDADIGIDILIERSLVKIEKNNKLGMHDLIRDMGREIVRKSSAKHPGKRSRLWSHKDAHDILTKNLGPENVEGLVLNAQRTDRVCFSTDAFKKMKNLRLLQLDHVDLTGDYSYFSKQLNIKQVWNGTKVLVNLKILNISHSRYLKSSPDFSKMPNLEKLIMKDCPCLAEIHPSIGDLKNLILINLKDCT 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5301g00001 434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 225 IPR027417 -
Trme5301g00001 434 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 434 IPR044974 GO:0006952
Trme5301g00001 434 Gene3D - 130 214 IPR042197 -
Trme5301g00001 434 SUPERFAMILY L domain-like 271 433 - -
Trme5301g00001 434 Gene3D - 1 125 IPR027417 -
Trme5301g00001 434 Gene3D Ribonuclease Inhibitor 265 434 IPR032675 -
Trme5301g00001 434 Pfam NB-ARC domain 1 214 IPR002182 GO:0043531
Trme5301g00001 434 PRINTS Disease resistance protein signature 373 389 - -
Trme5301g00001 434 PRINTS Disease resistance protein signature 165 179 - -
Trme5301g00001 434 PRINTS Disease resistance protein signature 72 86 - -
Trme5301g00001 434 FunFam Disease resistance protein (TIR-NBS-LRR class) 132 214 - -
Trme5301g00001 434 SUPERFAMILY "Winged helix" DNA-binding domain 200 307 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5301g00001 Trme-Chr5301 37 1732 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5301g00001 1 434 WRKY Transcription Factor Family AT5G45050 29.939 1.58e-55 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5301g00001 - - tpra:123923837 651.358