Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme53013g00001 ATGGCTGAGATGGAGATGCTAGGAAATGTCAAACATCCTAATCTGGTTCCTCTTTTAGGTTTTTGCGTGGCCAAAAAGGAGAAGCTTTTGGTCTTTAAAAACATGCCGAATGGAATGCTCCATGATCAACTACATCCTGCTGCTGGAGAGTGCACCCTCGACTGGCCTTCGAGACTCAAAATTGCAATAGGAGCGGCCAAAGGATTAGCATGGCTTCATCATACATGCAATCCTCGTATCATCCACCGAAACATAAGCTCTAAGTGCATCTTGTTGGACGCAGATTTCGAGCCCAAAATTTCTGATTTCGGCCTTGCCAGATTGATGAATCCACTCGCTACACATTTAAGTACTGTGATAAATGGTGAATTCGGCGATTTTGGTTATGTGGCTCCTGAGTATGCAAAAACACTAGTCGCTACGCCTAAGGGCGATGTTTTCAGTTTCGGNNNTNNNNNNNNNNTNNNNNNNNNNGGCGAAAGACCTGCAAATGTGGCGCTTCAAACTTTTAAAGGAAATCTCGTGGAATGGATTGCAGAGCTTACAAATTCCTCGGAACTCCACAATGCCATTGATGAATCACTAGTTGACAAGAGCAACGATAATGAGCTCTTCCAATTTTTAAAGGTTGCATGCAACTGTGTCTCACCATCTCCAAAGGAGAGGCCAACCATGTCTGAAGTGTATCAGTTATTAAGAGCTATTGGTGATAGGTACAATTTCACAACCGCGGATGAAATATTGGTACCTGAAGATATTGATGATAATAACATGGAGGAACTTATTGTTGCTAGAG 796 0.4171 MAEMEMLGNVKHPNLVPLLGFCVAKKEKLLVFKNMPNGMLHDQLHPAAGECTLDWPSRLKIAIGAAKGLAWLHHTCNPRIIHRNISSKCILLDADFEPKISDFGLARLMNPLATHLSTVINGEFGDFGYVAPEYAKTLVATPKGDVFSFGXXXXXXXXGERPANVALQTFKGNLVEWIAELTNSSELHNAIDESLVDKSNDNELFQFLKVACNCVSPSPKERPTMSEVYQLLRAIGDRYNFTTADEILVPEDIDDNNMEELIVAR 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme53013g00001 265 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 236 - -
Trme53013g00001 265 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 35 246 - -
Trme53013g00001 265 Gene3D Transferase(Phosphotransferase) domain 1 35 252 - -
Trme53013g00001 265 Pfam Protein tyrosine and serine/threonine kinase 1 231 IPR001245 GO:0004672|GO:0006468
Trme53013g00001 265 Gene3D Phosphorylase Kinase; domain 1 1 33 - -
Trme53013g00001 265 ProSiteProfiles Protein kinase domain profile. 1 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme53013g00001 265 SUPERFAMILY Protein kinase-like (PK-like) 2 232 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme53013g00001 Trme-Chr53013 1 796 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme53013g00001 2 242 Receptor kinase-like Gene Family AT1G27190 48.980 2.61e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Trme53013g00001 PK_Tyr_Ser-Thr 1.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme53013g00001 - - psat:127076602 449.514