Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52969g00001 ATGCATTTGGAGATTCCACGGACTCAAACGTTGTTGATAAAGTCTCTAAGGAACTTACTAACGACGACTTACTTTGATCGGGTGTCTCTAAAATTTGTATACTTGGGGGCAGGTGCTTTAGTTGCGTCATTTTTGCAGTTAGCTTGCTGGATGATCACCGGGGAGAGACAGGCTGCAAGAATTAGAGGCTTATACCTTAAAACAATTTTGAGACAAGATGTGATCTTCTCTGATAAGGAAACTAACACCGGGGAGGTTGTTGGAAGGATGTCGGGTGATACTGTTCTTATTAAAGATGCCATGGGGGAGAAG 312 0.4295 MHLEIPRTQTLLIKSLRNLLTTTYFDRVSLKFVYLGAGALVASFLQLACWMITGERQAARIRGLYLKTILRQDVIFSDKETNTGEVVGRMSGDTVLIKDAMGEK 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52969g00001 104 SUPERFAMILY ABC transporter transmembrane region 22 102 IPR036640 GO:0005524|GO:0016020
Trme52969g00001 104 Gene3D ABC transporter type 1, transmembrane domain 8 104 IPR036640 GO:0005524|GO:0016020
Trme52969g00001 104 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 17 104 IPR039421 -
Trme52969g00001 104 Pfam ABC transporter transmembrane region 25 104 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme52969g00001 104 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 28 103 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52969g00001 Trme-Chr52969 226 722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52969g00001 27 104 Calmodulin-binding Proteins AT2G36910 38.462 1.76e-15 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52969g00001 K05658 - rcu:8265878 137.887