Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52955g00001 TATGTATCATTCGGGAGGTTACTCTATTCTCCGGATTTAAGAAAACCACATAATCTGAGCGGTGGCTTGGAATCGTGGCACGGTTTCTACCAAAGTATAAGGCCTACTCAGATGGGATTATCGCTTAATGTTGACTTGTCATCGTCGGCGTTTATAGAACCGCTCCCTGTGATTGACATTGTAGCTCAAATTTTAGAAAAAGATGTGTACTCAAAGCCAATTTCAGATGCAGATCGCGTCAAGATTAAGAAAGCCTTAAGAGGTGTGAAAGTAGAAGTTACATATAGAGGAAGTTTTAGAAGGAAGTACAGGATAACAGGAGTAACATCACAGCCTACAAGGGAACTCTTGCGAAAAGAAGGCGAACTATTTGCCTATGGAGGCATGCAAGATAGTTGA 399 0.4135 YVSFGRLLYSPDLRKPHNLSGGLESWHGFYQSIRPTQMGLSLNVDLSSSAFIEPLPVIDIVAQILEKDVYSKPISDADRVKIKKALRGVKVEVTYRGSFRRKYRITGVTSQPTRELLRKEGELFAYGGMQDS 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52955g00001 132 Pfam Argonaute linker 1 domain 5 53 IPR014811 -
Trme52955g00001 132 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 5 117 - -
Trme52955g00001 132 Gene3D paz domain 49 122 - -
Trme52955g00001 132 SUPERFAMILY PAZ domain 1 116 IPR036085 GO:0005515
Trme52955g00001 132 ProSiteProfiles PAZ domain profile. 55 115 IPR003100 GO:0005515
Trme52955g00001 132 CDD PAZ_argonaute_like 54 116 - -
Trme52955g00001 132 SMART DUF1785_2 2 54 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52955g00001 Trme-Chr52955 53 909 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52955g00001 1 117 Eukaryotic Initiation Factors Gene Family AT5G43810 69.231 7.23e-54 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52955g00001 K11593 - gmx:100798086 202.986