Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme52915g00001 ATGGTTTTTTTCAGGTATCTTGATCTTCGTAAAAGGCTGATTATTGCAATGGATGCAGCTTTTGGAATGGAATATTTACACTCAAAAAACATTGTGCATTTCGACTTAAAATGCGACAATTTGCTTGTGAACTTGAAAGATCCTTTACGGCCAATATGCAAGGTTGGTGATTTTGGCTTGTCAAAAATTAAACGAAATACCTTAGTTACTGGTGGTGTGCGGGGAACTCTACCTTGGATGGCACCAGAGCTGCTTAATGGAAGCAGCAACAAGGTCTCAGAAAAG 285 0.393 MVFFRYLDLRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSNKVSEK 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme52915g00001 95 Pfam Protein tyrosine and serine/threonine kinase 7 88 IPR001245 GO:0004672|GO:0006468
Trme52915g00001 95 ProSiteProfiles Protein kinase domain profile. 1 95 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme52915g00001 95 ProSitePatterns Serine/Threonine protein kinases active-site signature. 31 43 IPR008271 GO:0004672|GO:0006468
Trme52915g00001 95 SUPERFAMILY Protein kinase-like (PK-like) 6 88 IPR011009 -
Trme52915g00001 95 Gene3D Transferase(Phosphotransferase) domain 1 4 95 - -
Trme52915g00001 95 PANTHER SERINE-THREONINE PROTEIN KINASE 7 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme52915g00001 Trme-Chr52915 49 424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme52915g00001 5 95 MAP Kinase Kinase Kinase AT1G16270 93.407 7.94e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trme52915g00001 PK_Tyr_Ser-Thr 9.1e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme52915g00001 - - tpra:123895538 187.578