Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme528g00001 ATGGAAATTTCATTGGCTTCTAACATAGAAGATCAAAAGAGAGATAAGATTGGTTGGTTACCTGGACAACCAAAGAATGTTGGATTTGAACAGTATTCAGGTTATGTGACTGTGAATAAGAAGAGAGGAAGAGCATTGTTTTATTGGTTGATTGAAGCACCACTGAGTCGTCAACCCGATTCAAGGCCACTGGTTTTATGGCTTAATGGTGGTCCTGGTTGTTCTTCTATTGCTTATGGTGCTTCCGAAGAAATTGGCCCTTTTCGTATTAGGCCTCATGGCAAGTCACTTTACTTGAATCCTTATGCTTGGAACAATTTGGCAAACTTACTATTCCTTGATTCTCCTGTTGGTGTTGGTTTTTCTTATTGTAATAAATCAGCTGATATGCACACATTTGGTGATCAGAAAACAGCTGAGGATGCATATATTTTTCTAGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGAATTCTACATTGCTGGGGAAAGTTATGCAGGTCATTATGTTCTTCAGTTAGCTCAAATTGTTAACCAGAGAAATAAAGGAATCAATAATCCAGTCATAAATTTTATGGGATTTATGGTTGGAAATGGTATGATTGATGATTATCATGATTATGTTGGGACATTTGAGTACTGGTGGACACATGGTTTGATTTCAGATTCCTCATATAAAATGCTAAACACTGGCTGTGATTTTACGTCCATTCAGCATCCATCAGTACAGTGTTTGCAGGCTCTTACAGTTGCACAGGCTGAACAGGGAAGCATTGATGGATACAGCATTAATACACCGGTTTGTAATGATACTGCGTCACTCAAAAGTGGCTTGAATCGTCGTTATCCATGGATGTATAGAGCATATGATCCATGTACTGAAAGGTATTCTGATGTGTATTTCAATCGTCCAGAAGTTCAGAAGGCACTTCATGCAAATTTAACTGGGATTCCATATGACTGGAAGGCATGCAGTGGTATTGTTTGGAATTATTGGACTGATTCCCCATTGTCTATGCTTCCTATATATCAAGAACTTATTAATGCTGGTCTCCGGATATGGGTATACAGTGGAGACACTGATGCTGTAATTCCGCTGACTGCAACTCGATATTCTATTGGTGCCTTGAAGCTACCAACCATAATCAATTGGTACCCTTGGTATGATAATGGCAAGGTTTGTGGATGGAGTCAAGTTTATAAAGGGTTAACATTGGTGACAGTAAGAGATGCTGGACATGAGGTTCCTCTTCATAAGCCTCGTGAGGCATTTATTCTTTTTAGATCATTCTTGGAAAACAAGTATATGCCATCATCAAGTTAG 1332 0.3851 MEISLASNIEDQKRDKIGWLPGQPKNVGFEQYSGYVTVNKKRGRALFYWLIEAPLSRQPDSRPLVLWLNGGPGCSSIAYGASEEIGPFRIRPHGKSLYLNPYAWNNLANLLFLDSPVGVGFSYCNKSADMHTFGDQKTAEDAYIFLVNWFERFPQYKHREFYIAGESYAGHYVLQLAQIVNQRNKGINNPVINFMGFMVGNGMIDDYHDYVGTFEYWWTHGLISDSSYKMLNTGCDFTSIQHPSVQCLQALTVAQAEQGSIDGYSINTPVCNDTASLKSGLNRRYPWMYRAYDPCTERYSDVYFNRPEVQKALHANLTGIPYDWKACSGIVWNYWTDSPLSMLPIYQELINAGLRIWVYSGDTDAVIPLTATRYSIGALKLPTIINWYPWYDNGKVCGWSQVYKGLTLVTVRDAGHEVPLHKPREAFILFRSFLENKYMPSSS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme528g00001 443 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 18 423 IPR001563 GO:0004185|GO:0006508
Trme528g00001 443 FunFam Carboxypeptidase 11 273 - -
Trme528g00001 443 ProSitePatterns Serine carboxypeptidases, histidine active site. 406 423 IPR033124 GO:0004185
Trme528g00001 443 Gene3D - 342 435 - -
Trme528g00001 443 Gene3D alpha/beta hydrolase 11 273 IPR029058 -
Trme528g00001 443 SUPERFAMILY alpha/beta-Hydrolases 14 440 IPR029058 -
Trme528g00001 443 PRINTS Carboxypeptidase C serine protease (S10) family signature 100 112 IPR001563 GO:0004185|GO:0006508
Trme528g00001 443 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 123 IPR001563 GO:0004185|GO:0006508
Trme528g00001 443 PRINTS Carboxypeptidase C serine protease (S10) family signature 149 174 IPR001563 GO:0004185|GO:0006508
Trme528g00001 443 PRINTS Carboxypeptidase C serine protease (S10) family signature 406 419 IPR001563 GO:0004185|GO:0006508
Trme528g00001 443 ProSitePatterns Serine carboxypeptidases, serine active site. 163 170 IPR018202 GO:0004185
Trme528g00001 443 Gene3D - 295 332 - -
Trme528g00001 443 FunFam Carboxypeptidase 342 436 - -
Trme528g00001 443 Pfam Serine carboxypeptidase 21 436 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme528g00001 Trme-Chr528 344 3616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme528g00001 305 437 Calmodulin-binding Proteins AT2G22960 29.851 4.07e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme528g00001 K16297 - gmx:100805722 782.326